Gene detail

Detail information of GWHGAAEX009006/evm.TU.scaffold_230.12

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383453054\|ref\|YP_005367043.1\|	4.00E-168	efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
KOG	KOG0058	0	Peptide exporter, ABC superfamily
nr	gi\|672202832\|ref\|XP_008778485.1\|	0	PREDICTED: ABC transporter B family member 25 [Phoenix dactylifera]
Swissprot	tr\|Q9FNU2\|AB25B_ORYSJ	0	ABC transporter B family member 25
trEMBL	tr\|M0TDI9\|M0TDI9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P00490_001}
TAIR	AT5G39040	0	transporter associated with antigen processing protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000227	299622	309721	+

Transcript Sequence
>GWHTAAEX009006 GTCGATTCCCCTGAATCCATCGCTATATATAAGGCATGGGAGGACGAAAGGGACGCTTTCTGCCTCTCCCACTTCATTTTGCCGGGATTTGAGTATTTGGCTTCGGATATTCTTTTGGATATAAAGGAAGGCTTCCCCAGTTCCTGCCTCCCCTTCAGCTTGCCCTAATTTCGCCATTGAGAAAGATAGTCGGGATTGATGGGGAAGCTAAGGATCAAGAGCGCTCCGAGCAGCACGACTCCGCTGCTGAATGGTGAGGAATCATCAAGTCGCCCAGCATCTGACCTTGAGCATGGTGATGCTGTTCAGCCAGCTAATGTTGGGTTCTGCAGGGTCCTAAGGCTGGCGAAACCCGATGCAGGGAAGCTGATTATTGCTACTATTGCACTGTTAATTGCATCTACAAGCAATATTTTGATTCCCAAGTACGGTGGGAAGATTATAGACATTGTGTCGAAGGATATAAGTGGGCCTGAGCAGCGAGAGAAAGCATTAGATGCTGTCAAGAACACTGTATTAGATATCGTTTTGGTGGTAGTGGGAGGGTCAATCTGTGCTGCAATACGAGCATGGCTGTTCAGTTCTGCTAGTGAAAGGGTGGTTGCTCGTTTGAGGAAGAATTTATTCGGCCATCTTATAAATCAAGAAATAGCATTCTTTGATGTTACTCGAACAGGGGAACTTTTAAGCAGATTATCTGAAGATACACAGATCTTGAAAAATGCTGCCACCACAAATCTGTCAGAGGCACTGCGTAATCTTTCGACTGCATTTATCGGACTTGGATTTATGTTTTCAACTTCTTGGAAACTGACTTTGTTGTCATTAGCTATAGTGCCTGCAATATCTGTGGTCGTGCGTAAGTTCGGGCGTTTCCTACGTGAACTTTCCCATAAGACTCAAGCTGCAGCCGCCGTAGCAGCTTCAATAGCTGAGGAATCGTTTGGAGCCATACGCACTGTCAGGTCTTTTGCGCAGGAGGGATACGAAATTTCGCGATATTCAGCTAAAGTAGATGAAACCTTGAACCTCGGACTCAAACAAGCTAAAGTTGTTGGTCTTTTTGCCGGTGGAATGAATGCAGCATCCACGTTGTCAGTTGCCATTGTTGTTCTGTACGGAGCCAATCTCACAATTAAAGGATCCATGACGACAGGGGACCTCACTTCTTTCATCCTTTACAGTCTTACAGTGGGGTCATCGGTCTCTGGCCTTTCGGGATTGTATACAACTATGATGAAAGCTGCAGGTGCAAGCAGAAGAGTTTTTCAGCTTCTTGATCGCGCCTCTATTATGCCAAAATCAGGTGACAAGTGTCCTGTCAGTGAAAAAGATAGTGAAGTGGAACTTGATGATGTCTGGTTTGCATATCCTTCTCGTCCTGGTCATATGGTATTGAAGGGCATCTCTTTAAAATTAACATCTGGATCAAAGATTGCTCTTGTTGGACCGAGCGGTGGCGGAAAAACTACAATAGCAAACCTAATTGAGCGCTTTTACGACCCTATTAAGGGTCAAATCCTATTGAATAGTGTCCCTCTGATGGAAATATCGCATCAATATCTTCACGGACAGGTGAGCATAGTGAGCCAAGAGCCTGTCCTTTTCAACTGCTCAATTGAGGAAAACATTGCATATGGCTTGGATGGAAAAGCGAGCACCGCAGACATTGAAAATGCGGCGAAAATGGCAAATGCGCACGAATTCGTCTCCAAATTCCCCGACCAATACAAAACGTTCGTCGGCGAAAGAGGGATACGGCTTTCGGGCGGCCAGAAACAGAGGATAGCCATTGCAAGGGCCCTGCTGATGAACCCTCGCGTTCTTTTACTGGACGAGGCTACAAGCGCTCTGGATGCGGAGAGCGAGTATCTTGTTCAAGATGCTATGGACTCTTTGATGGAAGGGCGAACGGTGCTCGTGATAGCGCACCGGCTATCAACCGTCAAGAGTGCGGACATTGTCGCGGTGGTGTCAGACGGGCAGATCGCTGAGAGTGGCAGTCACGATGAGCTTTTAAGCCAGAATGGCATCTACACTGCGCTCGTAAAGAGGCAGTTGCAGTCGCCCAATGTAGAAATTTCGATATAGATTTCAAGCTTCTGGTTATGTGATTAGCAATTTTGTTCATTTGCAAGGGTTTCCTGCAGATCTGCAGGTTTGGTGTACTTGGAGTTTATCTGGCTGCCACTTGTAGCATTCTTGATGATGCCCAAAGAAATGCCTTAAAATGAGTGTTATCTAAACTTTAATTGTAAACTGGTTCAGCTTTGGGTTCATCAAATGAGAGGAATGTTACCCTACTATCTGGGCATAATTGACTTTGCTGTTTGTTCTTAATAATAAAACTTAATTTAATCTATATTCTGTTATTTGGTGTTATTGCCTACATCAGGAATAATGCTTGCATCCTCTTCAATTAGAAAAATAAAAAGGTTTATGGATTCTTC

Network for GWHGAAEX009006

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	57	332	1.80E-63
PF00005.26	ABC_tran	400	550	3.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	61.770
SRP064423	SRR2545915	Juvenile tuber	79.560
SRP108465	SRR5643513	five period of Gastrodia elata	44.850
	SRR5643514	five period of Gastrodia elata	56.030
	SRR5643515	five period of Gastrodia elata	39.780
	SRR5643524	five period of Gastrodia elata	51.190
	SRR5643525	five period of Gastrodia elata	90.870
	SRR5643528	five period of Gastrodia elata	65.270
	SRR5643658	five period of Gastrodia elata	90.550
	SRR5643659	five period of Gastrodia elata	52.460
	SRR5643660	five period of Gastrodia elata	55.400
	SRR5643661	five period of Gastrodia elata	52.000
	SRR5643662	five period of Gastrodia elata	50.380
	SRR5643663	five period of Gastrodia elata	57.340
	SRR5643664	five period of Gastrodia elata	51.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	47.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	47.300
SRP279888	Gastro	Gastrodia elata tuber	37.13
	Juven	Juvenile tuber	83.08
	Mother_Gastro	Mother tuber of Gastrodia elata	47.15
	Mother_Juven	Mother tuber of Juvenile	61.57