Gene detail

Detail information of GWHGAAEX009007/evm.TU.scaffold_230.13

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1267	2.00E-79	Mitochondrial transcription termination factor, mTERF
nr	gi\|695020370\|ref\|XP_009397231.1\|	2.16E-109	PREDICTED: uncharacterized protein LOC103982139 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M5WC12\|M5WC12_PRUPE	2.00E-84	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11297.1}
TAIR	AT1G74120	2.00E-79	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000227	309906	313345	-

Transcript Sequence
>GWHTAAEX009007 GCCCTAAAATTCGCAAAACCCTAAATCGGTTGCTTCCTTTATGAAACGCATGACACCGTGCGACATCTCCTCCATTCTCAAATCTGCGTTCCTCGCGTGCTCCTTCTCGCTTCATGACACATGTCGGTGCGGATCTCTAGAAAGCCTGCAACTCGCGCCGGTCTTTTGACCTAACGCCGAGCAGTGACCGCTCAGTCACCTGCGCTGCAGCCGGCGGTTCTTCAAACTTTCCAATCTGCAAACCTCCTTTGCTTTCTCCTCAGATCGATCAAAAGAAACGTAAAGACTCCTCGGCTACCTTCTTCTTTACCTTTTACTTCAATTTCAAGTTCATCTTTGCTAATAAGGATTACAAAAAGTAATCCAATTTGTTCTCATTATCTCATAAATAAGTGCGGCAGCGTCAGCATCTCCATTCATTCTGCTGTTTGCTAGAATGGCGGTTAGGGCATTACTGGCCCGAATACCTTCTCCTCAAGAGCTTCGATCCTTCTCGAATTCCCTCAGAAAACGCATCTCCCCCTCAAAATCGGTCTCAATCGTCCGCGATTGGCCCCAAACCCCAGACCTCGATTTCTGTGCCGCAATTCTGGGGAGATGCGCAAGAATCGGGATTGAGACGGAGGACTTTATTCGAAATTTAGGGCGAATGAGGAGTCTGGGACTGAGTACTGGAACGCTGATGAAGGTTTTCGAGGTGCTGCCCGGCGCTTTTATGCGAGACGGGATCGACGCTGGCCCTGGAATTCAGTTCTTGAAGAAGGACGCTGGGATCACCAGTCAGGAGGAAATAAATCAGATCTGCAGGTGTTATCCAGAATTCTTGGTATTAGGAACCGAGAACCGATTGAGGCCACTCTTCGTTGAAATCTCGGACTTGGGATTTGATCCAAATGATGTCAAAAAGCTCCTAATACAGAATCCCAGGTTTCTTGTCGGCCTGGAACATGGAGAGCTTTCAAGCTGCGTGAACTTGCTCAAAGGCCTCAATTGTCGAATCCACACAAAAAAGAAAATTCTTGCAAATGGCCTCCTTCACGCTTCCGTTGGCGTAAAGATTCGAATCGACTTGCTATGCGGCCATGGATTGATTCGAAGAGATGCGTTCAAGATCCTCAACGTCGAGCCGAGGTCCATCTTGTATTCGCTTGAGGATTTGGAGACTAAGATACAGTTTTTATTACAAAGAATGGGGCTTAGTATCTATCACCTAGTGGAATTGCCTGATTATTTGGGAGTGAATTTGGAGAAGCAGATCATACATAGATTACAAGTTGTGGAGCTTCTCAAATCAAAAGGTGCCCTTAAGATGATGGTGGAACTGAAGCATTTTGTGAGCTTGAGCAGGAGAAAGTTCTACAACTTCTTTGTCAAGCCTTATCCTGAATGTGAAAAGATCTTCGGGGGATTAGTGAGGGATGTGAGTTTAAATGCTCAGAAAATGAAGCCGAAACATCCTCCTGGCTTGTGGAAGCTGTTTAAGTCGCAAAAGTATTCTAAATCTGAAGAGGATGTGAAGAACATGAAGCAGTTTATGGAGAAGTTGTTTTAAACTTTTGCACAGATGAAATTACAGCTATTGAATGAAGAAGTATTTCGGTTCATTAGCTCTTCAAAAAGTTTGTTTTAATCTGTATAATCATCTTATTAGAGGAACATTAAAGCAGGGATTTTTATTTTTTCATTTTTTTTCTAGCATCCTCACCACCCTATACTGATGATCCCCTCTGCCGGATCCGAATTCCCACATCTGCCAAATCTTAATCTTCCCTCCCTCACTTTCTTTCTGTCTATGTGTGCAATCTGATTCCTTCCTCTGTAATTGATCCTTCC

Network for GWHGAAEX009007

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.13	mTERF	146	307	6.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003690	Molecular Function	double-stranded DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.590
SRP064423	SRR2545915	Juvenile tuber	2.520
SRP108465	SRR5643513	five period of Gastrodia elata	3.040
	SRR5643514	five period of Gastrodia elata	3.440
	SRR5643515	five period of Gastrodia elata	2.880
	SRR5643524	five period of Gastrodia elata	3.030
	SRR5643525	five period of Gastrodia elata	3.180
	SRR5643528	five period of Gastrodia elata	2.760
	SRR5643658	five period of Gastrodia elata	3.040
	SRR5643659	five period of Gastrodia elata	5.840
	SRR5643660	five period of Gastrodia elata	5.770
	SRR5643661	five period of Gastrodia elata	5.480
	SRR5643662	five period of Gastrodia elata	5.290
	SRR5643663	five period of Gastrodia elata	4.530
	SRR5643664	five period of Gastrodia elata	3.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.560
SRP279888	Gastro	Gastrodia elata tuber	3.58
	Juven	Juvenile tuber	2.12
	Mother_Gastro	Mother tuber of Gastrodia elata	4.64
	Mother_Juven	Mother tuber of Juvenile	3.00