Gene detail

Detail information of GWHGAAEX009008/evm.TU.scaffold_230.15

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695059419\|ref\|XP_009418069.1\|	3.29E-98	PREDICTED: uncharacterized protein LOC103998344 isoform X2 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0U1H4\|M0U1H4_MUSAM	6.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P18670_001}
TAIR	AT3G29760_2	8.00E-67	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000227	345551	389405	+

Transcript Sequence
>GWHTAAEX009008 TTTTTTTTTCTTAGTTCCTAACTTACGCAGTGACGTTGTGGGCACAATTCGCTGCTTCGCCCTTCCCAAGTAGAAACCCTCTCTCCGGCGAAAGGCGGAGCCGGAAATCTTCGACTTTCCATCTCCGGCCACCTCGATAAGACGGAGTACAGGACATCATACTGAGCAACAGAGATTACAAAGGAAGAAGGTTAACATGCCTGATTTTACTGACTATGATTCAGAAGAAAAGGTCTTTCAAGAACTATCTTTAAGTGACAATTCGGCTGATGCAATTGAGAGGAATAGTATTCTTGCTGATGTAACTGGTGATTATCGTAATTGTAATAAAACGACACTTGAAGGCACCTCTGATTCTAACAATTTTTATAGTGGTGTAGCAGAAGACTGCTCAAGATCCAACTTAGTGATTCCCAATGTGTCTCAATTCAATGAAGCTCCCTTATCTCATGCTGATCAAATTTTCACTTCTTTTGATTGTTCACTAGAAGCCACATGTGCTGCCACAGTGAATAAGAATCTCTCAAGTGATATTGTGCCAGTTGAGAAAGGTAGATTGCTAGAAAACTTTAATAAAGATAGTGTTATACTTGAAGAATTTGAAAATCACAATTGCTTAAAGAGCATGAAAAGGAGAAGAGATACCATGTCTGATTTTACTGTGTATGGTTCAAGGAAAAAGGTTTGTGAAAAATCATCATTGGATGTCAATTTGGTGGAAACAATTGAGAGAAATGTTGCTGTAGCTGATGTAACTGGTGATTATTCTGATAGTAATAAGAAGACACTTGAAACCAACTCTAGTTCAAACAATTTAAGTGGCGGCTATATAACAGCAAACTGCCAAAGATTCAACCTAGTGATAACAGAGGACTGTCAAACATCCAATTTATCACAAGCTGACGAAGCTCCCTCATCTGAAGTTGATCAAGCTTTCACTTCCTCTGATAGCTCATCAGAAGCCACACACACTTCTACTGGGAATGAGCATCTTTCAATTAATGTAGTATCTGATCAAACAAATAAGTTAACTGAAAATTTGGATAAAAGAAGTATTAATCTTGAAGACTTTGAATATTTCAATGACTTGAAGAATCTGAAAAAGAGAAGAGATTGTTTGCCTGATCTTACTGAATATGCTTCAGGGAAAGAGACCTGCGAAGAAGCATTTTTAGGTGACAATTTGGTGGTTGAGCATGAGAGAAATAATAATCTCGCTGATGTAACTGATGATTATCCTGGTAGTAATAAGATGGCGCTTGAAGTTAAATCTACTGCTAGCAAATTAAGTAGTCGTGTAACAGAGCACTACCGACAATCCAACTTAAAGATAATTGAGGACTGTCAAAGATCCAATTTACCTCAATCTGAAGAAACTCCTTTAATTCAAGTTGAGCAAGCAGTCACTTCCTCTGATAGCTCATCAGAAGCTACAACTGATATGGCATTTGTTGCAAATGATAAGTTAGTGGAAAACTTGGATAAAGAAACTGTTACTTACGAAAAGTTTGAAAATCATAATGTTTTAAAGGGCACCAAAAGGAGATTCGATAGCTTGTCTGATTTTACTAAATATGGTTCAGGGAAAAATATGTGTCAAGAATCATCTATGGGTAACAATTTGATGGGGGCAATCGAGACAAACAGTACTCTGGTTGATGCAACCGATGATTATCATGATAGTAATAAGATAACACTAGAAGCCAATTTGATTCCTGACAATTTAAATAGTGGTGTGACAGAGGACTGCCAAAGATCCAACTTAGTTATAACTAATGATTGTCAAAGAACTGATTTATCTCAATTTGATGAAGCTTTTTTGTCTCAAATTGATCAAGCAGTCACTTCCTCTGATAGTTCGTCAGAAGCCACTCCTGCTGCCTCAGTGAATAAGCATCCCTCAAGTGGTATAATACAGGTTGAGAAAACCAAGAGTCGTGGAAATTTAAATACAGAAAGTATTCTTCTTGAATTGTTTGATAATCCCAAAAACTTAAAGAGCAATAAAAGGAGAAGAGACTGCATGTCTAATTTTACTGAACATGGTTTATGGAAAAATTTTTGTCAAGAACCTTCTTTGGATGACAAATTGGTGGGGGCAGTTGGGAGAAAGAGTACTCTGGTTAATAATACATCTGGCGATCCTGATTGTAAAATGATGATACTTGAAGTTACCTCTAGTTCCTTAAATGGTGGTATGGAAGGGCTTGCAGCTTTTACTTCAACAATGCAAACTAACATCATTGATGAAGCAGCTTCAGAATCTTACCTAAATAACGGGCCTTCGATCATAGTTGATGTGGCAGGTAAAGTAATGGCTGATAACCCATCTTTCTATAATGAAGTTTCTGGGCAACATGTGGTTGGTTCAATGCCTCTATTAACTGAATGTAGCAATGATGAAAACTTCGAGAATGCAGCTCAAGAGACTGTAGAGGCAACTGTTTCTGAGAAAGTGAACTTCACTATGCTTGAAGAGAGTCCTGGATGCACTGCATTTTCCTCAGCTATGTCTGTTGAAATTAACCCAAAAATTCCTTATGCTAATTTCAAAGGGGACTCGAGCTTGCCTCCCTCACCTATTACAGGTGTCATAGACTGCTTTATCGGTAAGTCCAATGGGCATGATCTTCACTCGGTTTTGCTTAATGAGGAAGATACTTCTTTCTCGTTCCACCTTCCGAACAAAACTTTTGGTAAAGAGATACCTAGGAATGAAATTGGTTTTGATATTCAAGGCACATTAGGGAGATTTGCTGAATCACATGAATGCTCTCAGAATCTGTCAATAGGTAATTATGGAGATAGAGATAGCGAGCAAAAGGAAAGAGCAGCTTTTGTTTCATGCTGTTCCACGTCAGAAGGTGATAATCCTATTTCTGAAGAGAAAATTACAGAAGTTCAGACAATTGACTCCATACCATTGGAAATATCGCTGAGACGCCATCCGAGGAAAAAACTTATTGTTCTTGATCTGAATGGCTTGCTTTGCGATATAGTCAATGATTATCACCCTTCTTGTAGAGTAGAAAAGAAGGTTGGGGGAAAACCAATTTTTAAAAGACCATTTTGTGATGATTTTATGAAGTTTTGCTTCGATAATTTTAATATCGGCATTTGGTCTTCGAGGAGAAAGTATAATGTTGATGGTGCTCTTGATTACCTTTTGGGGGAGTTCAAACATCAGTTGCTGTTTTGTTGGGATCAATCAAAATGCACCTATACTGGTGCCAGAACCATTGAGAATCATCACAAGCCGTTGGTTCTAAAGGAGCTGAAGAAACTATGGAACAAGGAAGAACCTGATCTCCCTTGGGAGGAGGGAGAGTTCACTCCATCTAATACTTTGTTGTTGGATGATTCTCCATACAAGGCTCTCTGCAATCCTAGATACACTGCCATTTTTCCTCGTCCATACCAATACACAGATGAAGGAGATGAATCCTTAGGCCTGAGAGGAGATATCCGAGTTTATCTGGAAAACCTTCTTGCAAGCGACGATGTCCGGGATTTTGTCAAAGAGCATCCTTTCGGGCAACCCCCCATAACGGAATCGGATCGGCATTGGGATTTCTACCATAGAATCATCAGGAACAACAGTGCAATTCAATATAATTACAACGCTTAGTGCTGATATGCTGCAGATTTCCTCTTCAAATGAAACTAATTGGAGAAAGATGATAAAGGATGGCATTCGTGAGCAATGCTAAAAAGCTTAATAGAAAGAGGGCATATATATATGTTCATAAATAATTGTATAGTTTTGGCATCTTATGATTAATTTTATGGCTTTATTTTCTCTATAATGCTTTTAGGATTGGGGAGAGAATTTTGGAGGATATAGCATTTTTGTATAAACAAAACTTTCTCTTTTTTTGGGTAATAAATCTAGTGTTTGTTTTCCTTTCATAGGAAAAAAAGGCATTCCTCATCTGAACAAAATTTGCAGTGCTGGAGCAGAATCTACTGCTTTTTATTTCTAGATTGTATATATTTAAATTTTATGATATTTTGTTGGCCTATTGTTGAGATTTGATGAATAAAAGCTTATGATCTGAAGCA

Network for GWHGAAEX009008

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03031.17	NIF	921	1104	6.00E-19

Protein Sequence

>GWHPAAEX009008
MPDFTDYDSEEKVFQELSLSDNSADAIERNSILADVTGDYRNCNKTTLEGTSDSNNFYSGVAEDCSRSNLVIPNVSQFNEAPLSHADQIFTSFDCSLEATCAATVNKNLSSDIVPVEKGRLLENFNKDSVILEEFENHNCLKSMKRRRDTMSDFTVYGSRKKVCEKSSLDVNLVETIERNVAVADVTGDYSDSNKKTLETNSSSNNLSGGYITANCQRFNLVITEDCQTSNLSQADEAPSSEVDQAFTSSDSSSEATHTSTGNEHLSINVVSDQTNKLTENLDKRSINLEDFEYFNDLKNLKKRRDCLPDLTEYASGKETCEEAFLGDNLVVEHERNNNLADVTDDYPGSNKMALEVKSTASKLSSRVTEHYRQSNLKIIEDCQRSNLPQSEETPLIQVEQAVTSSDSSSEATTDMAFVANDKLVENLDKETVTYEKFENHNVLKGTKRRFDSLSDFTKYGSGKNMCQESSMGNNLMGAIETNSTLVDATDDYHDSNKITLEANLIPDNLNSGVTEDCQRSNLVITNDCQRTDLSQFDEAFLSQIDQAVTSSDSSSEATPAASVNKHPSSGIIQVEKTKSRGNLNTESILLELFDNPKNLKSNKRRRDCMSNFTEHGLWKNFCQEPSLDDKLVGAVGRKSTLVNNTSGDPDCKMMILEVTSSSLNGGMEGLAAFTSTMQTNIIDEAASESYLNNGPSIIVDVAGKVMADNPSFYNEVSGQHVVGSMPLLTECSNDENFENAAQETVEATVSEKVNFTMLEESPGCTAFSSAMSVEINPKIPYANFKGDSSLPPSPITGVIDCFIGKSNGHDLHSVLLNEEDTSFSFHLPNKTFGKEIPRNEIGFDIQGTLGRFAESHECSQNLSIGNYGDRDSEQKERAAFVSCCSTSEGDNPISEEKITEVQTIDSIPLEISLRRHPRKKLIVLDLNGLLCDIVNDYHPSCRVEKKVGGKPIFKRPFCDDFMKFCFDNFNIGIWSSRRKYNVDGALDYLLGEFKHQLLFCWDQSKCTYTGARTIENHHKPLVLKELKKLWNKEEPDLPWEEGEFTPSNTLLLDDSPYKALCNPRYTAIFPRPYQYTDEGDESLGLRGDIRVYLENLLASDDVRDFVKEHPFGQPPITESDRHWDFYHRIIRNNSAIQYNYNA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.560
SRP064423	SRR2545915	Juvenile tuber	34.380
SRP108465	SRR5643513	five period of Gastrodia elata	19.290
	SRR5643514	five period of Gastrodia elata	17.150
	SRR5643515	five period of Gastrodia elata	18.350
	SRR5643524	five period of Gastrodia elata	18.370
	SRR5643525	five period of Gastrodia elata	17.160
	SRR5643528	five period of Gastrodia elata	13.000
	SRR5643658	five period of Gastrodia elata	16.450
	SRR5643659	five period of Gastrodia elata	16.260
	SRR5643660	five period of Gastrodia elata	17.380
	SRR5643661	five period of Gastrodia elata	16.200
	SRR5643662	five period of Gastrodia elata	15.360
	SRR5643663	five period of Gastrodia elata	17.170
	SRR5643664	five period of Gastrodia elata	15.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.120
SRP279888	Gastro	Gastrodia elata tuber	24.03
	Juven	Juvenile tuber	27.99
	Mother_Gastro	Mother tuber of Gastrodia elata	21.23
	Mother_Juven	Mother tuber of Juvenile	27.99