Gene detail

Detail information of GWHGAAEX009012/evm.TU.scaffold_230.20

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428312180\|ref\|YP_007123157.1\|	2.00E-24	WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
KOG	KOG0313	0	Microtubule binding protein YTM1 (contains WD40 repeats)
nr	gi\|743847648\|ref\|XP_010939153.1\|	0	PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Elaeis guineensis]
Swissprot	tr\|A8IR43\|WDR12_CHLRE	3.00E-74	Ribosome biogenesis protein WDR12 homolog {ECO:0000255\|HAMAP-Rule:MF_03029}
trEMBL	tr\|M0SJ48\|M0SJ48_MUSAM	0	Ribosome biogenesis protein WDR12 homolog {ECO:0000256\|HAMAP-Rule:MF_03029}
TAIR	AT5G15550	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000227	455003	487038	-

Transcript Sequence
>GWHTAAEX009012 CTTTCCGTGAAGTTCGGGGGGAAGGTAAGTTCCTCGGCCCATTTCTTCCCGGTTCGTAAGATTCTTTGTTGGTTTCAGGTAATTGGAACTCCATTGGCATCGGCGGCTTAAAAAAATGAGAGATTGATTTGCAAGTTCCATTTATCTGTAAGGCTAGTCATGCTCAACGTCCAAATTTAATGTTTCTTAGTGCAGAAATGGATTCCAATGGGACCAGCGAGGAGTCGTCGAGGCAGATCCGTGTTCGCTTTGTGACGAAGTTGAATCCACCATTTAAAGTTCCGTCGAATTCAATTGCAGTTCCCGCCAATCTCAGTAGAATGGGACTCTCAGAGATAGTGAACCTTCTTATCAAGAACAGCAGTACAGAGTTTCAGTCTACACCTTTTGACTTTCTCATTGACGGAGAACTTATTCGGATGCCGCTAGAGCAATTTCTAATAGCAAAGGGTATTACTGCTGAAAAAATACTTGAGATAGAATATATAAAGGCTGTTGCCCATCAAAAGACGGGGGATCCATCTTTGCACGATGATTGGGTTAGCACAGTTGATGGATCCAACCCCAGATTTGTTTTAACCGGTTGCTATGATAGTCTTGCAAGGATATGGAAAGATGGGATACATTGTACGCATATCTTGCATGGCCATAATGGAGCAATTACATCTATTAGCATAATTAATCAAAAAGGTAGTTGTAGAAATAACGACATTTGTGTAGCCACTGGTTCAAAGGACAAGACGCTGAGGTTGTGGATGTTTGATGCAGCGGAGTCTGTTAATAATCCAATCAGGATTGGCTCGTTTAAAATTCTGAAGGGGCATACATCATCAGTACAGAGCATCGCAGCTATTCCTTCCGGAGATATAGTATGCTCAGGATCTTGGGATAGTTCAATCAAGCTGTGGAAAGTAGTGTCTGAAGGAGATAGCGACTCTGTGTCAGTAAAGAGGAGAAAGCTTGTAGGTGATGCTGATGAGGCACAATTGGAGGAGGAAGCTACAGCAGAATTTTTGGGCCATACACAGTGTGTATCATCGGTAGTTTGGCCAGAGCCTCAAACCCTATATTCAGCATCATGGGATCATTCTATTAGAAGCTGGGATGTTCAGTCTGAGAAAGAAATTTTGAATACGCTTTGTGGTAAAGCACTGAATTGTCTCGATGTTGGAGGTGAAGCGTCCTCACTTCTAGCTTCTGGGGGCTCTGATCCTGTTGTGAGAGTCTGGGACCCTCGAAAACCAGGCACTACGGGTCCAATTTTTCAATTCTCGTCTCACTCATCTTGGGTCAGCGCATGCAAGTGGCACCCGAGATCAATATTTCACTTGCTTTCGGCATCTTATGATGGGAAGGTTATGTTATGGGATTTGAGAACTGCGTGGCCATTGGTAAAAATAGATATGCACAAGGACAAGGTGCTGTGTGCAGATTGGTGGAAAGATGATAGTGTAGTTAGTGGAGGAGCTGATTCAAAACTCTTCATTTCTTCAGGGATATCTATAAGCTGAGGCTACTTAATGGTATTACTTAACTTTGTAATTTCTTGCACATGTTCTTTATATTTTGGTTATTTAATTTTATTAATTTTTAAAATTAATTTTGACATTGTTTGGCTCTATTTCCCTCAATAAAGTTTCCCTAAATAATTTATTCTGGCAAAGTTAAATTTATGGCCTTTGGATGATAGAGATGATGAAATGCCTTCTTAATTCATCATCTTGTTCTAAAACCTAATTCAATCAATACTTTCTCGCCTTTAACCTTAATAAGATTCAAGCAATAGAAGATCGGACGATGATGTCATTTGATGAAAAAACCTTATGGTGATCATGACAATCCCTTGGCTGTTGTAGCTTAAGAAGGGAGTATTCTTTGATTTTGTCCAATTCAGTAAGAATGCGTATTCATCAAAGGCTGGATCAGACTATTCACAGTTGTCTTAAGAGGTTTTCTAGAGGTTGAGCTGAGAGACCAAAGAGTGGGATCATTGCAAATGTGAATCCGTAGCTTTGGAAAAGCTGCCCAAATAGGCTTGATAATTCGAAGGTGCCCAACGAAGACAGAGAGAAGTGCAGTGAAGCTCTAGTCATGGCGGCTAGGTCAAGAAAAATGGGAGGACATCAAGTGTGTATATATGTTGTGCATATACTTGTTCATGTCACATATTATTGTGCTTATGGCTGAAATCGAGCTGAGTTTGATAGAATTAGATAAGACTTGAATTCGAAATTTTTGATTGAATAGGACTCGAACTCGAACTCAACTCGAACTTGGATCGAATTCGAGTCAAGTTGATTACAAATTGAAACAAATCGTGTTCAAGCTGACTTGAAGTTGCTTCAAGTTAACTCAGGAATTAATATAAAAAACTATAAATTATTTAATAATATAAAATTCATAATTTTCAGTAAATCTAAAAGAAAAATACCATGAAGTTGCCTGACAGGTTCGAGCCCGAGACTCGCACGTTAAGACAGCAGTGTTACCACGCCGGAGTTGTTATTTTTGCAAGCTAAGGTTATAATTTAATTAATTATATATATATTGGGGTGTATGTTTTGAGTTTTAGTCAACTTGAACTCTGCTCGAAAATCATTTGAGTCTCTAGCCATTTAACTCGTGAATCGCCTCGACAACTTTGAGCCAATTCAATTCGACTCAAAACTCGAGTGACTTTCGAGCGAATCCCGAGTTTCAGGTAAAACTGACGGCCCGATTAATTACCTTGTATCTATAATGCGTGATGTCACCATATTCATTCGAAGCAAAGGCCTTGTATGCTATAAGAACCTTATTTCCTTTCATTTTTTGAATGAAATGCAGATATATGAAGAGTGGCTACGAAT

Network for GWHGAAEX009012

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08154.11	NLE	20	87	1.50E-19
PF00400.31	WD40	150	192	1.60E-05
PF00400.31	WD40	210	244	2.50E-06
PF00400.31	WD40	276	309	0.0082
PF00400.31	WD40	335	351	0.082
PF00400.31	WD40	361	397	8.60E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042254	Biological Process	ribosome biogenesis
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.610
SRP064423	SRR2545915	Juvenile tuber	29.170
SRP108465	SRR5643513	five period of Gastrodia elata	22.470
	SRR5643514	five period of Gastrodia elata	18.580
	SRR5643515	five period of Gastrodia elata	18.000
	SRR5643524	five period of Gastrodia elata	19.070
	SRR5643525	five period of Gastrodia elata	15.320
	SRR5643528	five period of Gastrodia elata	10.260
	SRR5643658	five period of Gastrodia elata	14.270
	SRR5643659	five period of Gastrodia elata	21.610
	SRR5643660	five period of Gastrodia elata	18.920
	SRR5643661	five period of Gastrodia elata	20.190
	SRR5643662	five period of Gastrodia elata	18.880
	SRR5643663	five period of Gastrodia elata	20.580
	SRR5643664	five period of Gastrodia elata	18.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.030
SRP279888	Gastro	Gastrodia elata tuber	25.99
	Juven	Juvenile tuber	29.14
	Mother_Gastro	Mother tuber of Gastrodia elata	18.03
	Mother_Juven	Mother tuber of Juvenile	25.53