Detail information of GWHGAAEX009018/evm.TU.scaffold_230.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392406879|ref|YP_006443487.1| | 6.00E-12 | pseudouridylate synthase I [Anaerobaculum mobile DSM 13181] |
| KOG | KOG2553 | 2.00E-144 | Pseudouridylate synthase |
| nr | gi|743782235|ref|XP_010921092.1| | 0 | PREDICTED: putative tRNA pseudouridine synthase [Elaeis guineensis] |
| Swissprot | tr|O22928|PUSH_ARATH | 5.00E-145 | Putative tRNA pseudouridine synthase |
| trEMBL | tr|F6GUG3|F6GUG3_VITVI | 4.00E-174 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB43417.1} |
| TAIR | AT2G30320 | 2.00E-144 | Pseudouridine synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000227 | 541409 | 585702 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009018
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01416.19 | PseudoU_synth_1 | 290 | 466 | 2.10E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009451 | Biological Process | RNA modification |
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0031119 | Biological Process | tRNA pseudouridine synthesis |
| GO:0009982 | Molecular Function | pseudouridine synthase activity |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.130 |
| SRR2545915 | Juvenile tuber | 5.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.670 |
| SRR5643514 | five period of Gastrodia elata | 2.770 | |
| SRR5643515 | five period of Gastrodia elata | 2.930 | |
| SRR5643524 | five period of Gastrodia elata | 2.890 | |
| SRR5643525 | five period of Gastrodia elata | 2.620 | |
| SRR5643528 | five period of Gastrodia elata | 3.270 | |
| SRR5643658 | five period of Gastrodia elata | 3.440 | |
| SRR5643659 | five period of Gastrodia elata | 2.140 | |
| SRR5643660 | five period of Gastrodia elata | 2.460 | |
| SRR5643661 | five period of Gastrodia elata | 2.680 | |
| SRR5643662 | five period of Gastrodia elata | 2.540 | |
| SRR5643663 | five period of Gastrodia elata | 2.790 | |
| SRR5643664 | five period of Gastrodia elata | 3.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.90 |
| Juven | Juvenile tuber | 4.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.03 | |
| Mother_Juven | Mother tuber of Juvenile | 4.88 |