Gene detail

Detail information of GWHGAAEX009024/evm.TU.scaffold_230.33

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672176472\|ref\|XP_008808308.1\|	2.15E-115	PREDICTED: transcription factor RF2b-like [Phoenix dactylifera]
Swissprot	tr\|Q6S4P4\|RF2B_ORYSJ	4.00E-94	Transcription factor RF2b
trEMBL	tr\|M0S974\|M0S974_MUSAM	2.00E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P18830_001}
TAIR	AT2G40620	1.00E-81	Basic-leucine zipper (bZIP) transcription factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000227	692924	736237	-

Transcript Sequence
>GWHTAAEX009024 ATGCATGCGAATCCCGTAGATCCATCCCATTCACACTCTCAATCCCAACCCTCGAGAGCTAACACCGTCCCGAATCTAAATTTATCCCGGCGAGCGGAATCAAATGCATTACCGCCGGCGCTGGTTCCGGCGATTGCTGCTGGAACCCTTGGCATTTTGCCGAATTACGCAGAGGTAACCATCGGAAGCCCTCACCATAGGCGTTCCAGATCCGAGCTCGCTCTTCGGTTTTCAGAAGACTTCGGAGCGAGCTCCGGCGACCCTATGGCTGCTGGTAGCTTCGACGATCTGGGGTCGGAGGAGGACGACTTGTTTTCTACCTACATGGACATCGAGAAGATCGGATGCAAGCTGGAGGGCAGCGGATCGGGGTCGGAGGACGGGGCGTGCCGAGATAGGAGGAGGAATGGCAATGCGAACGATGGAGGAGCCGCGGAGGGTTTGAGGACGAATCATCGGCACAGTAGCTCGGTGGATGGTTCGTCGGTGTCTTCGATGGCTGCCGCAAAGCGGGAGGTGATGCTGGCGGAGCTGGTGGAGGCGAAGAAGGCCATGACGGCGGATCAGCTGGCGGAGCTTTCCGCCATTGATCCAAAGAGAGCGAAGAGGATTATAGCTAACCGGCAATCGGCAGCTCGCTCAAAAGAAAGAAAAGCACGATATATCTCTGAACTTGAAAGGAGAGTGCAGACTCTTCAAACTGAAGCCACAACACTATCTGCACAGCTTACACTGTTTCAGAGAGATACAACTGGTTTGACTGCAGAGAATGCAGAGCTTAAGATGCGCTTACAAGCTATGGAACAACAAGCTCAACTTCGTGATGCGCTGAATGAAGCCCTAAAGCAAGAGGTGGAGCGACTCCGAATTGCGACCGGGGAAGCGTCATCATCTGGTGATCCCCACCACAATGTGGGGCTAATAAATCCCTCTTTCCCCTACAATATTGTTGCCCCTCCTCCCTTCTTCCAACTCCCCACAAACCACCCTTTCCTCCCTCAAGACCACATTGGCAGGCTTCAGGGCTTAGACATCAGCAAAGGCTCTTCTTCCTCCACCATCAGAGTCAAGTCTGAAAGCCCCTCCACTTCACCCAGTGAGAACAGCAGCAACTTCTGATCTCACTCACAGCTAGGTTCTTTTTTTATTATTTTTAAATAAAATTTTATTATTTTATCTGAAAACATTTTTTTATTATTATTAGTGCAATTTTGTTATATAGTTCATGGCATCATCATTCTTCTTCCATTAAATGCATTCATTTTGCTTGATTTATCTCACTATCTCCATTCATTGTTTGCTTTCAAGTAGAGGCAATTTGTGTGCATAAAATCTTATATTTCAACTCTTTTTTGTGCTTACATTTTGAAAGTTGTGGTCAATTAATTGCCTCACTATTATTTTCTTTAAGGACTTTGCTACACTTACACATTAAAGAACACAATAATATGCAAATTATGCG

Network for GWHGAAEX009024

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.20	bZIP_1	199	244	4.30E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.010
SRP064423	SRR2545915	Juvenile tuber	2.570
SRP108465	SRR5643513	five period of Gastrodia elata	5.200
	SRR5643514	five period of Gastrodia elata	3.760
	SRR5643515	five period of Gastrodia elata	4.210
	SRR5643524	five period of Gastrodia elata	3.700
	SRR5643525	five period of Gastrodia elata	4.160
	SRR5643528	five period of Gastrodia elata	6.100
	SRR5643658	five period of Gastrodia elata	4.210
	SRR5643659	five period of Gastrodia elata	4.250
	SRR5643660	five period of Gastrodia elata	3.320
	SRR5643661	five period of Gastrodia elata	5.380
	SRR5643662	five period of Gastrodia elata	4.320
	SRR5643663	five period of Gastrodia elata	3.660
	SRR5643664	five period of Gastrodia elata	2.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.640
SRP279888	Gastro	Gastrodia elata tuber	1.74
	Juven	Juvenile tuber	3.99
	Mother_Gastro	Mother tuber of Gastrodia elata	3.42
	Mother_Juven	Mother tuber of Juvenile	2.95