Gene detail

Detail information of GWHGAAEX009027/evm.TU.scaffold_230.36

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|719987571\|ref\|XP_010252057.1\|	0	PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q6Z3U3\|Y7797_ORYSJ	0	B3 domain-containing protein Os07g0679700
trEMBL	tr\|K3ZQF4\|K3ZQF4_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si028834m}
TAIR	AT2G30470	1.00E-168	high-level expression of sugar-inducible gene 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000227	745121	770949	-

Transcript Sequence
>GWHTAAEX009027 ATGCCGACGAAGCGATGCATGAACGCTGGGTGTGGATCGGGCGGCGGAGTATGGAGGAAGGGCTGGATGCTGAGATCGGGCGAATTTGCCACGCTATGCGATAAGTGCGGGTTGGCATATGAGAAGTTAGTCTTTTGCGAAAGTTTTCACCAAAAGGAATCTGGATGGAGGGAATGTGCTTTTTGTGGCAAGCGACTACATTGTGGATGCATGGCTTCAAAGTCTATTCTCGATCTACTTGATGGTGGTGGAGTCCAATGCCTTGGTTGCTTGAAAAATTATGGAAATTCTTCTATCCTAGGCGAACCTGTTCAGGATTTGTTGCCTCAGTCTTCTCAGAGAGTTCTTGCGTTATCATCTAGATGTTCTATTGATGAGAAGATGAATGAGTTTGGTATTCATGCTGATGGATCGTCTGAACTCCAAATCAACTCTTCTGACCGCATCATCACTGATGATGCAACTGCTAAGTGCAATCTTATGCAGTTTGGCAGAAACTTAGATGTTAATGGTTATAGCACCATGCTTCTTGCACAGAGAGAGAACACAGATGGATCTCTTTGGCAAATCAAACAGGGGAATGCTTTACTTCATAGCAGTGATTTTGGACGCTCAGGCTTCTCTGGTAAAGGACAAGGACTTCTAGGGTTTTCACAAACTTCCCAAGGAGGTGATTCTAAAGATATTATAAAAGATAATTTAAATAATCCACTGGCTGAAGCATGTCTTCGCATGAGTTTGGGTAGTTCAAACGTGGGCAGTATTTTTGATGCTTGTTCCAATCTTGGTACTCGACAAATTGCACTGTCCCATCATGGTACAATTGACGATGGAAGGGATCAAGGAAAATTCTTAACTACATTCCAGAATGCTCACAGGGCTCAGCATGTTCTGCCAAAACTACCAAAGGCAAGTCACGGAGTCACTTCAGATGCACCAAAAGAATTGGTTCCTCAAATGCGTGTTGCTCGGCCACCTGCTGAAGGAAGGGGGAGGAATCAGTTGCTTCCTCGGTATTGGCCAAGGATCACTGATCAAGAATTGCAACAAATATCTGGAGATTCGAACTCAACCATTGTACCACTTTTTGAGAAGGTTCTCAGTGCTAGTGATGCTGGGCGTATAGGCCGTTTAGTTCTTCCCAAAGCATGTGCTGAGGCATATTTCCCTCCAATTTCTCAACCAGAGGGCCTTCCGTTAAAAATTCAAGATGCTAAAGGCAAAGAGTGGCATTTTCAGTTCAGATTTTGGCCAAATAACAACAGCAGAATGTACGTATTAGAGGGTGTTACTCCATGCATACAGTCTTTACAGTTGCAAGCTGGTGATACAGTAACTTTCAGCAGGATAGATCCTGAGGGGAAACTTGTAATGGGCTTTCGAAAGGCAACTAATGCTATCCCTCTGCAGGCAAGTTTTGACACCCAAATTTCTGCTTTGGCTACTGGGGTTATTGGAAATGAAACCTTCTTTTCAGGTGTTAATGAGAACCTGCTTGTAAGTGGTTACTCTGGACTTCTTCAGTCGCTGAAGGGAACTGGAGATCCCCAGTTGAGCCATTTTCCTGAAAATTTAATTTATGCTGATGGGGATGTCAGTTTCATACAGAGTGATAAACATGGAAGTTGGGCAAATGAGGGGTTATTGCAGCCGTTATTATTATCTCCAGAGAAGAGAAGAAGTCGGAACATTGGTTCCAAAAGCAAGAGATTACTTATGGACAATGAAGATGCGATGGAGCTTAAGCTTTCATGGGAGGAGGCACAAAATTTGTTGCGCCCTCCTCCGAGGGTTAAACCAAGCATTGTCATAATTGAGGATCAAGAATTTGAGGAATATGATGAACCTCCAGTTCTAGGGAAGAAGACCTTTTTCACTGCTCGGACTTCTGGTAGTCAAGATCAATGGATCCAGTGCGATGACTGCTATAAATGGAGAAGGATTCCTGTGGAAGTCCTGCCTCCTTCAAAATGGACATGCGCTGAGAATACATGGGATTCTAAAAGGTCTTCATGCGCTATGCCAGATGAATTAACACCAAGGGAGCTGCAAGACCTCCTTAGGCAGCATGCAGAGCTGAAAAGGCAGTGCGCCTCATCTTTAAAGCAGTCTCCATCTGATGCTGAGCTGACCCCTCTTGATGCCACTCCGCTCAGCGAGGCAGGCAGCCAAGTGTCTCCCTCATCTGCAGCAACGACGAGGCATCCCCGTCACCGCCCCGGCTGCACGTGTATCGTCTGCATCCAGCCGCCGAGCGGGAAGGGCCCAAAACACAGCCCCGCCTGCACCTGCAACGTCTGCATGACCGTAAGGCGTCGTTTCAAGACCCTCATGATGAGGAAGAAGAAGCGCCAATCGGAGCGCGAGGAGGCTGACACGACCAACAAGAAGCCATCTCTCGGAAACAGGGAAGAAGATCTTGAAGGCACAAGCTGTGGTGGCAGCAGCTTACTAAAGGAAAGAGATAAAGATCCCTTGGAAACCACCCTGGAGATATCAAAGGGCCATATCGACTTAAACTTTCAACCTCAGCGCAATCTGGAGCGGCGAGACGCCTCCTCATCTCCATCTTTGTCGCCGCAGATGAGCATGATGACCCTCCTTCAGGCCGCCAGCCTTCCTCTTGATTACTATCTGAAGCAGAATAGGATGGCAAACCTGACAGCTGCGGGCGAGCAACAGCAGGTTAGCTCCAGCTCAGCCACCGTCGTTCATCAAGCTGCCGGCGAGAGTGAGAGCGGCGGCGACGAGGATCGGCACTCCGGCTCCGATAAGGTCAGAAGCCATAGCTGA

Network for GWHGAAEX009027

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.20	B3	363	462	5.60E-16
PF07496.14	zf-CW	635	677	1.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.950
SRP064423	SRR2545915	Juvenile tuber	34.600
SRP108465	SRR5643513	five period of Gastrodia elata	25.740
	SRR5643514	five period of Gastrodia elata	23.180
	SRR5643515	five period of Gastrodia elata	22.530
	SRR5643524	five period of Gastrodia elata	23.930
	SRR5643525	five period of Gastrodia elata	26.130
	SRR5643528	five period of Gastrodia elata	27.310
	SRR5643658	five period of Gastrodia elata	29.850
	SRR5643659	five period of Gastrodia elata	20.320
	SRR5643660	five period of Gastrodia elata	23.020
	SRR5643661	five period of Gastrodia elata	20.060
	SRR5643662	five period of Gastrodia elata	24.420
	SRR5643663	five period of Gastrodia elata	23.700
	SRR5643664	five period of Gastrodia elata	22.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.590
SRP279888	Gastro	Gastrodia elata tuber	31.13
	Juven	Juvenile tuber	33.49
	Mother_Gastro	Mother tuber of Gastrodia elata	33.71
	Mother_Juven	Mother tuber of Juvenile	43.77