Gene detail

Detail information of GWHGAAEX009028/evm.TU.scaffold_230.37

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743883017\|ref\|XP_010909305.1\|	1.93E-167	PREDICTED: uncharacterized protein LOC105035446 [Elaeis guineensis]
Swissprot	tr\|P14233\|TGA1B_TOBAC	2.00E-21	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)
trEMBL	tr\|M0SHL2\|M0SHL2_MUSAM	4.00E-121	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P24960_001}
TAIR	AT3G56660	3.00E-85	basic region/leucine zipper motif protein 49

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000227	788188	804594	-

Transcript Sequence
>GWHTAAEX009028 CCCTTCCAAGCGAAGATTTGTTCTCCTCAAATTCTAGAGGAAGATGGGATGCGAATCCCTCCCTCGGGCTCTCATGGAAGGAAAGCCCTAGAATTGGAAAATTTTCAGAAGGAAAAGGTCCTTTACCTGCTCTTCTTTCCTTGTGCGTCCAGTCTCCGAAACCCTAATCAATGGCGGAGATCGGTGGCACCGATCCCTTTCTTCCACTGATCGAATCCGTGCTCTTATCCAGCTCCGATTTATTCCACCGGGATATCTTACACGACGAAAAGTGCGTCCTCCAAGGAGGATTTGCATCTGACCTCGATTTGGGCTTAGATGGCATCGATTGGGACATCTCCGTCGACGATCTTCTGCTTCCAGATTGTCCTGGATCTTCGCCGCCTCACTCCGGCTTGTCGTCTTCCTCCCCTGTCACTGCAGATGAGTCGGGTAGCATGAGCTCGAGATCACCAGAATCAGGACACTCGGCCAATTTCTGCGCGGATTCTGGTCCGGAAGTGAGGCAGGAATCGAAGAACAGGTGGGGGATCAAAAGAAAAAAAAAGCAAGATGAAGAAGAAACCGACAATTATACTCTGAATTCTAGGAGCAGTAAGTTCCAAAGGGTAGATGAGATCAAATCCTGCGTCTTAAACGCTGGGAGCGAGGAGGAGGGGGAGAAGAGGAATGCAAGGCTTATGCGGAACAGGGAAAGCGCGCAGCTCTCAAGGCAAAGGAAGAAGCATTATGTGGAGGAGTTGGAGGAGAAGGTTCGGTCCATTCAGTCCACAATCACTGAACTGAACAACAAGATACAATTTTTCATGGCTGAAAATGCATGCCTAAAGCAGCAATTGTGTGGAAAGGGAGGTGGCGTCCCTCTACCGTGCTTTTGCGCCCCTCCTGCTGTTAATCCCATGCATTTCCCGTGGATCCCTTTTCCGGGTGTTGCATTTAAGCCTCCGGGCTCTGCGGTGCCATTGGTTCCTATACCTAAGTTAAAGCCTCGTCAATCAGCCAATGCTGGAAAGGTAAAGAAATCAGAGGCCAACAAGAGTGGGGGTAAGATTAAGAAGGTTGCAAGCATTAGTCTTTTGGGGTTTCTGTTTGTGATAATGATTTGCAAAGGTTTTGTACCTAGAGTAGGATTTGTTTTTGAAGGTAGCAGCAATATACAGGGATTAGGACAGGGCAGAATTGTGTATTTAGGTGATTCTCATGGCAAGGTCTTGAGTGTTAGTGGTCTTACTGGCAGCATGAATCATATAGAGAAAGTTGAGTTCAATAATGCAAATGGTTCGAGAGAAGATGGTTTTGATAGAGTGACAAATAGAAGCTCTTATGTTAAACAGACTGGATCAGAAGAGAAATCACTGAGTTTTGATAATCATTCATATTCCCAGAACTCTACTGAGACTCTTCCTGTTTTTCTATATGTTTCAAGAAATGGTAAGCACGTGAAAATCAATGGAAATTTGATAATCAATTCTGTTCTGGCTAGTGAGAAGGCAGCTGCTCAAGCAAATTTTAGAAATAAGGGTGTAAAATCTGTTTCAGAGGAGGATATAGATATTGGCTTCGAGGCTCCTGGAAACATGGCATCTGCACTTGCACTATCAAAATCTGGAAATGGTATTAACAGGCATTTAAAGTCCCGTGGGAGCTCAGCTGAAAATCAGAGCATAGTTTCTTCTGATTCTGATGATGCTTCCAAGGAAGCATCATTAGATGGTCCTCTGCAGCAATGGTTCCGGGAAGGATTAGCAGGCCCCATATTCAGTTCAGGCACATGCACTGAAGTTTTTCGGTATGAAATCTCCCCAAATTCAGGCATCATCCACGCTTCCTCAACCGCCAATGCAACTAAATCTCCTGGCACCAATTCGACAGAAAGCCTCCCTGCATTGTCGGCACGCCCGCGGAAGAAGAGTCGAAGGCTTCTTCGTCCACGCGACATCCCATTTGTTTCCAAATCAAAGCATAACGAAAGTGAGCGCTTGAGCGAGGCGGGGCCCAAGAGCGGCGAATTCCCGTCTAATAAGAGCACCTCGATGGCTCCCATGATCGTCTCCATCCTGGCGGATCCAAGGGAAATCGGAGATGGCGATGTAGATGACATGATCTCGCCAAAAAAATCGCTTTCCCGGATATTCGTGGTGGTGCTTCTTGATAGTGTCAAGTATGTCACTTACTCCTGTGTCCTTCCATTCATGAGTCCTGGTTCTCATCTTGTGAACTGACCTTGCTTGGAGAAAGCTAACATAGTAAGGTGCTGGAAGAATTTGTGGCCTTTTTATGGAATCTGTTTTTTTTTTTTCTTTTTTCATTGCTTTTTAGGTTAGAATGCCCAAGGCATGATGAACTTGCGCATTTTTGTTTTTTATGAGCTGAGCTTTGTTGGAAGCTTTTCTTTACCTCCGCTTTTTTAGGTGGAATAAATACTTATTTAGCCCTCAAATGGAAGGTGCTCTCTACTTATATAGCTCATAAATTTTGACTCTCATAGTGTTGCTACCCAATCTTGTTCTCTTTTATTTGCAATGATTATAATGATTTGGTA

Network for GWHGAAEX009028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.20	bZIP_1	164	223	8.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.070
SRP064423	SRR2545915	Juvenile tuber	11.420
SRP108465	SRR5643513	five period of Gastrodia elata	15.610
	SRR5643514	five period of Gastrodia elata	18.090
	SRR5643515	five period of Gastrodia elata	13.090
	SRR5643524	five period of Gastrodia elata	15.740
	SRR5643525	five period of Gastrodia elata	10.710
	SRR5643528	five period of Gastrodia elata	7.760
	SRR5643658	five period of Gastrodia elata	6.780
	SRR5643659	five period of Gastrodia elata	7.970
	SRR5643660	five period of Gastrodia elata	7.980
	SRR5643661	five period of Gastrodia elata	7.950
	SRR5643662	five period of Gastrodia elata	7.580
	SRR5643663	five period of Gastrodia elata	5.910
	SRR5643664	five period of Gastrodia elata	6.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.270
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.590
SRP279888	Gastro	Gastrodia elata tuber	10.37
	Juven	Juvenile tuber	19.14
	Mother_Gastro	Mother tuber of Gastrodia elata	10.89
	Mother_Juven	Mother tuber of Juvenile	16.61