Detail information of GWHGAAEX009038/evm.TU.scaffold_231.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337747372|ref|YP_004641534.1| | 4.00E-13 | beta-glucanase [Paenibacillus mucilaginosus KNP414] |
| nr | gi|743803894|ref|XP_010927056.1| | 6.57E-157 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Elaeis guineensis] |
| Swissprot | tr|Q38910|XTH23_ARATH | 4.00E-146 | Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor) |
| trEMBL | tr|A1E368|A1E368_MUSAC | 1.00E-151 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT4G25810 | 1.00E-145 | xyloglucan endotransglycosylase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000229 | 334045 | 335673 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009038
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 92 | 272 | 7.00E-60 |
| PF06955.11 | XET_C | 304 | 346 | 1.70E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14504 | TCH4 | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0048046 | Cellular Component | apoplast |
| GO:0005618 | Cellular Component | cell wall |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.290 |
| SRR5643514 | five period of Gastrodia elata | 8.830 | |
| SRR5643515 | five period of Gastrodia elata | 3.960 | |
| SRR5643524 | five period of Gastrodia elata | 5.710 | |
| SRR5643525 | five period of Gastrodia elata | 4.840 | |
| SRR5643528 | five period of Gastrodia elata | 0.640 | |
| SRR5643658 | five period of Gastrodia elata | 9.240 | |
| SRR5643659 | five period of Gastrodia elata | 4.220 | |
| SRR5643660 | five period of Gastrodia elata | 1.580 | |
| SRR5643661 | five period of Gastrodia elata | 8.740 | |
| SRR5643662 | five period of Gastrodia elata | 47.240 | |
| SRR5643663 | five period of Gastrodia elata | 96.110 | |
| SRR5643664 | five period of Gastrodia elata | 18.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.57 |
| Juven | Juvenile tuber | 0.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.45 | |
| Mother_Juven | Mother tuber of Juvenile | 0.77 |