Detail information of GWHGAAEX009055/evm.TU.scaffold_232.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|720021165|ref|XP_010262642.1|6.65E-93PREDICTED: PRA1 family protein A1 [Nelumbo nucifera]
Swissprottr|Q8GWC3|PR1A2_ARATH1.00E-72PRA1 family protein A2
trEMBLtr|W1PK87|W1PK87_AMBTC1.00E-92Uncharacterized protein {ECO:0000313|EMBL:ERN08071.1}
TAIRAT5G020406.00E-69prenylated RAB acceptor 1.A1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000240185321232919+
Transcript Sequence

Network for GWHGAAEX009055

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03208.18PRA1201735.50E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.960
SRR2545915Juvenile tuber14.400
SRP108465SRR5643513five period of Gastrodia elata4.160
SRR5643514five period of Gastrodia elata5.500
SRR5643515five period of Gastrodia elata3.730
SRR5643524five period of Gastrodia elata5.060
SRR5643525five period of Gastrodia elata4.420
SRR5643528five period of Gastrodia elata6.770
SRR5643658five period of Gastrodia elata5.350
SRR5643659five period of Gastrodia elata6.260
SRR5643660five period of Gastrodia elata8.140
SRR5643661five period of Gastrodia elata4.810
SRR5643662five period of Gastrodia elata6.560
SRR5643663five period of Gastrodia elata6.060
SRR5643664five period of Gastrodia elata6.820
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.610
SRR6049655Rhizomagastrodiae_C368-T10_good_13.480
SRR6049656Rhizomagastrodiae_C368-T07_good_14.840
SRR6049657Rhizomagastrodiae_C368-T07_good_13.820
SRR6049658Rhizomagastrodiae_C368-T04_good_13.070
SRR6049659Rhizomagastrodiae_C368-T04_good_13.950
SRR6049660Rhizomagastrodiae_C368-T01_good_12.740
SRR6049661Rhizomagastrodiae_C368-T04_good_12.620
SRR6049662Rhizomagastrodiae_C368-T01_good_14.500
SRR6049663Rhizomagastrodiae_C368-T01_good_14.760
SRR6049664Rhizomagastrodiae_C368-T10_good_15.580
SRR6049665Rhizomagastrodiae_C368-T10_good_15.580
SRP279888GastroGastrodia elata tuber 4.95
JuvenJuvenile tuber3.30
Mother_GastroMother tuber of Gastrodia elata 4.54
Mother_JuvenMother tuber of Juvenile 4.90