Detail information of GWHGAAEX009057/evm.TU.scaffold_232.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430742304|ref|YP_007201433.1| | 5.00E-22 | protein kinase family protein [Singulisphaera acidiphila DSM 18658] |
| nr | gi|672114528|ref|XP_008777366.1| | 0 | PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Phoenix dactylifera] |
| Swissprot | tr|Q9M2S4|LRKS4_ARATH | 0 | L-type lectin-domain containing receptor kinase S.4 (Precursor) |
| trEMBL | tr|W5G3A8|W5G3A8_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_5DS_940304198.1} |
| TAIR | AT3G55550 | 0 | Concanavalin A-like lectin protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000240 | 266177 | 269624 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009057
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00139.18 | Lectin_legB | 22 | 267 | 1.80E-76 |
| PF00069.24 | Pkinase | 337 | 560 | 1.30E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_L-LEC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.240 |
| SRR2545915 | Juvenile tuber | 17.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 57.350 |
| SRR5643514 | five period of Gastrodia elata | 33.960 | |
| SRR5643515 | five period of Gastrodia elata | 61.180 | |
| SRR5643524 | five period of Gastrodia elata | 44.520 | |
| SRR5643525 | five period of Gastrodia elata | 41.370 | |
| SRR5643528 | five period of Gastrodia elata | 30.310 | |
| SRR5643658 | five period of Gastrodia elata | 30.960 | |
| SRR5643659 | five period of Gastrodia elata | 56.840 | |
| SRR5643660 | five period of Gastrodia elata | 58.460 | |
| SRR5643661 | five period of Gastrodia elata | 63.280 | |
| SRR5643662 | five period of Gastrodia elata | 54.540 | |
| SRR5643663 | five period of Gastrodia elata | 46.580 | |
| SRR5643664 | five period of Gastrodia elata | 53.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 56.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 53.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 54.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 58.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 63.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 46.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.38 |
| Juven | Juvenile tuber | 30.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.75 | |
| Mother_Juven | Mother tuber of Juvenile | 27.60 |