Detail information of GWHGAAEX009066/evm.TU.scaffold_232.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743780567|ref|XP_010920544.1| | 1.69E-50 | PREDICTED: probable WRKY transcription factor 49 [Elaeis guineensis] |
| Swissprot | tr|Q9FHR7|WRK49_ARATH | 3.00E-32 | Probable WRKY transcription factor 49 |
| trEMBL | tr|M0REA8|M0REA8_MUSAM | 1.00E-46 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P00810_001} |
| TAIR | AT5G43290 | 1.00E-31 | WRKY DNA-binding protein 49 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000240 | 492731 | 495559 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009066
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03106.14 | WRKY | 76 | 132 | 4.40E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | WRKY |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.140 |
| SRR5643514 | five period of Gastrodia elata | 2.980 | |
| SRR5643515 | five period of Gastrodia elata | 0.610 | |
| SRR5643524 | five period of Gastrodia elata | 1.620 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.300 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.670 | |
| SRR5643664 | five period of Gastrodia elata | 0.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.42 |
| Juven | Juvenile tuber | 0.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.25 |