Gene detail

Detail information of GWHGAAEX009068/evm.TU.scaffold_232.26

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743780607\|ref\|XP_010920554.1\|	PREDICTED: scarecrow-like protein 9 [Elaeis guineensis]
Swissprot	tr\|O80933\|SCL9_ARATH	Scarecrow-like protein 9
trEMBL	tr\|J3LRQ7\|J3LRQ7_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB03G37330.1}
TAIR	AT2G37650	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000240	515039	518913	-

Transcript Sequence
>GWHTAAEX009068 TTATGATATTACTGTATGACAAGTTATGAATAAATATTGGGAGCAATGAGCAGCCGATTAAAATACAAGAAATTCCCAATCCTTACTAATAATTATATATCCCAGTTATTTGCTGCTTTTAGAGGGTTTGGGCCTTTGTGGAATAAAAAAATTATACTTTTGACACCAAATCAGACGCATTGGCGTCGCTTAAAACAGTGATTTAGTATTAAATAAGATAAATATCACTCTTTTCGATCTCAATCGCCCGCTCGCTTCCGAGCAAAAGATAGATAGAGAGAGTTGGCAGCAGAAGAAGAGATCATGATTCATCGAGTTCAGTGAATTCACTCAGCTGGCGTTTTTTTTTGGATGTTTTCACGACTCATTTTGATACTCTTAGCGTTCTTCAAGGGTTTTAAGTATACTGTGATTCAATGGTTATGGATCCACGGCTGCATGAGGGATCTGATGTGGATCGATTGATTTATGAGGATTTCTTCTCGTCTCAAAAATTCATGGAAAGCAGGGGTTTCAAGATGAGTTATCATCATCGCACGGTCATGGATGGCAGCAGCTTGCATGTCTCTAATGGCTTGGATGCGTCTCATCAAAATAACCTCCATGGGCATAAAACGAGCTTTACTGAACCCTACAAAAATCTGAACAACCATGCCAACAATTATCCTGCCTTGGGCTCAGTGCTTGCATCAAATGGAAAAGCTGGTTCAACCTCAAGCACAAGTCATGAGGGAGATTCCTCTGAAGACTCCGAGATCTTCTCCGATATTGTTCTGGGCTATATAAACAAGATGCTGATGGAAGAGGATGTGGATGAGAAGATAAATCTGTTTTACCAGGAGAAGTCTGCCCTTCGGGCAGCAGAGAAACCCTTCTATGATATCCTCGGGCAGCAATACCCGCCCCCGTCCCCTCCCAATGACGATAATAGTAGTAGAATAGAGAGGAGGAGCCCTGAGGAAACTAGCTCCAGTCATGGTGTTTTGAGCGGGGAGAGCAGCAGCAGTGGGGTTTCTTCGGAGAGCCGTCAGTTTTCATTCAGCGCAACCAGTGTTCCCAGCCTTTTGATTGAAAGCCAGCCTGCTTGGCAGTTTAAGAGAGGGATGGAGGAGGCTCAGAAGTTCCTCCCCAGTGAGAAGAAATTGGTCATCGATCTCAATGTGCAGAATTTCTCTTCGAATTGTGATGCGAAGGAGAAAGGTACCACCTTTGTTGGCAGCGAGCATAAAGTCGAGAATGGACAGCTGCTCTCGTTTGCTAGGCTGCGAGGCCGGAAGAAGCCCCAAAGCGAGGATTTGGATTTGCAGGAAGGTAGAAGCATTAAGCAGTCGGCTAAGTCCTCCTCCGACGATGCTGTTCGGTCCGAGATGTTTGATCTGGTCTTACTTTGCCAGGGTTTGAGTAGGTGCGGATTGGGTAAGGCCGCCGATGGGTATCAACTGGCGATGCAGAACGGAACTAATAGCAGTTCTCAGGTTGGCCGGAAGGCTCGGGGCAAGAGGCAGCAGAAGAAGGATGTGGTTGACTTGAGAACCCTGCTTTTACACTGTGCTCAGGCTGTGGCTGCTGATGACCGCCGCAATGCTAATGAGATGCTGAAGCAGATCAGGCAGTATTCCTCTCCTTTCGGCGATGGAACACAAAGATTGGCCCACTGCTTCGCGGATGGGCTAGAGGCTCGCTTAGCAGGTACCGGAAGCCAAATCTACCATTCTCTCGCGGCAAAGCGAACGACAGCCACTGATATCCTGAAGGCATACCAGCTCTATCTCTCGGCGTGCCCGTTCAAGAAGATATCACATTTCTTCTCCAACCAGACAATACTGAATGCCTCTGAGAAGGCATCTAGGGTGCACATTATAGATTTTGGAATCTACTTTGGCTTCCAGTGGCCCTGCCTTATTCAGCGTCTTTCTTCAAGGCCGGGCGGCCCGCCAAAGCTCCGGATCACTGGCGTCGATGTGCCTCAGCCTGGATTCCGCCCTACGGAGCGCATCGAAGAGACTGGCAAAAGGCTGGCGGATTATTCCAAGAGCTTCAATGTTCCGTTCGAGTACAACGCAATTACATCCAAATGGGAGACCATTTGCGTCGAAGATTTGAAGATTGAAAAAGACGAGGTGCTCATCGTGAACTGCTTATACTGCTTTAGGAATCTCGTTGATGAAACCGTCGTTGTCGACAGTCCCCGGAATAAGGTCCTGACGATGATCAGAAAGGCGAATCCTGACGTCTTCATCCACGGAATTGTCAATGGCTCCTACAGTGTGCCTTTCTTCGTCACCCGCTTTCGGGAAGCTCTGTTCCACTACTCGTCGTTGTTCGACATGCTCGAAACAACTGTGCCTCGAGAGGACGCTCAGAGGATGCTGATTGAGAGGGACCTATTCGGGCGGGAGGCCCTCAATGTTATATCGTGCGAGGGGCCGCAAAGGGTGGAGAGGCCTGAAACCTACAAGCAGTGGCAGGTTAGAAACCTGAGGGCTGGGTTTTCTCAACTTGAGCTCGATCCTTTGATCATGAAGAAGGCAAAGGACAAAGTCAGGATGCGTTATCATAGAGATTTTGTAATTGATGAAGACAGCAGGTGGCTTCTCCAGGGTTGGAAAGGGCGCATCATATATGCTGTTTCTACATGGAAACCCTGTGATGTTTTGTAGGAGCATTTGGATCGTAGTTATGGCTTGACAGTTCAAAGCAAATTGTTTAGCCACCATAGTGTGACTTCTGCTGAAGACAACTCTCTCGTATGCAAATATTCACTTATGTTTGCTGGCTTTTGAGAAAGCTTGTGGAAGGAAAAGGGGGAGTCTTTCAAGCTGAATAAAGATGACCGAAAATTTTTAGAAGAGCAGAAGCAGTTCTTCAAGATTTTAATAAAAACTATATTTTATTTTAGTTGTATTTTGACATTTGAATATTCTATGCATGGTTTTGTGATGCCCACCATATGCAGTGTGGTCGGTGGTTAGCTAATTATCCAATGAATTATTGCAAGGGTCTCTATCTTAGTTGCTATTTGCAATCAAGATATATTTGCTATTGTATTAAATGGTTGTCTTGTTTTCACACCTTAGCGCAAGCTTTAGGCTAAGAATGGGTTTGGTCATGGGTGCATTGAGCCAGATTAGAGCCATTGGTTTTAATGTGCTTGTCCGGTTTGTCGACGAACAGAGCTCAAGTGCTGGCGATTTTTTCGATTTTTTCAATGCCCCCGCCTCTTTGTCAAGTGAGATGTCTCTTGTGTAGCAGTGTGCCCATTGCTAATGTTACTCTTGCAGGCTGGCTTCAAATTCGAGTTGC

Network for GWHGAAEX009068

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	371	742	7.50E-119

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.780
SRP064423	SRR2545915	Juvenile tuber	19.250
SRP108465	SRR5643513	five period of Gastrodia elata	16.500
	SRR5643514	five period of Gastrodia elata	25.310
	SRR5643515	five period of Gastrodia elata	19.380
	SRR5643524	five period of Gastrodia elata	29.110
	SRR5643525	five period of Gastrodia elata	12.340
	SRR5643528	five period of Gastrodia elata	8.400
	SRR5643658	five period of Gastrodia elata	10.430
	SRR5643659	five period of Gastrodia elata	19.550
	SRR5643660	five period of Gastrodia elata	20.280
	SRR5643661	five period of Gastrodia elata	21.240
	SRR5643662	five period of Gastrodia elata	21.090
	SRR5643663	five period of Gastrodia elata	20.770
	SRR5643664	five period of Gastrodia elata	17.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.590
SRP279888	Gastro	Gastrodia elata tuber	20.74
	Juven	Juvenile tuber	24.71
	Mother_Gastro	Mother tuber of Gastrodia elata	35.30
	Mother_Juven	Mother tuber of Juvenile	44.50