Detail information of GWHGAAEX009069/evm.TU.scaffold_232.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|389873083|ref|YP_006380502.1|1.00E-34ATP-dependent RNA helicase [Advenella kashmirensis WT001]
KOGKOG03480ATP-dependent RNA helicase
nrgi|672122541|ref|XP_008784605.1|0PREDICTED: DEAD-box ATP-dependent RNA helicase 17 [Phoenix dactylifera]
Swissprottr|Q0DLB9|RH17_ORYSJ0DEAD-box ATP-dependent RNA helicase 17
trEMBLtr|A0A061FZ38|A0A061FZ38_THECC0P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 {ECO:0000313|EMBL:EOY20069.1}
TAIRAT2G407000P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000240527513545775+
Transcript Sequence

Network for GWHGAAEX009069

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD441543.50E-17
PF00271.30Helicase_C2333562.70E-24
PF13959.5DUF42174234832.50E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.110
SRR2545915Juvenile tuber22.940
SRP108465SRR5643513five period of Gastrodia elata17.950
SRR5643514five period of Gastrodia elata21.550
SRR5643515five period of Gastrodia elata19.100
SRR5643524five period of Gastrodia elata22.650
SRR5643525five period of Gastrodia elata28.660
SRR5643528five period of Gastrodia elata22.280
SRR5643658five period of Gastrodia elata22.240
SRR5643659five period of Gastrodia elata22.080
SRR5643660five period of Gastrodia elata21.590
SRR5643661five period of Gastrodia elata21.370
SRR5643662five period of Gastrodia elata18.890
SRR5643663five period of Gastrodia elata21.940
SRR5643664five period of Gastrodia elata20.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.620
SRR6049655Rhizomagastrodiae_C368-T10_good_117.870
SRR6049656Rhizomagastrodiae_C368-T07_good_123.840
SRR6049657Rhizomagastrodiae_C368-T07_good_124.900
SRR6049658Rhizomagastrodiae_C368-T04_good_127.370
SRR6049659Rhizomagastrodiae_C368-T04_good_128.310
SRR6049660Rhizomagastrodiae_C368-T01_good_123.980
SRR6049661Rhizomagastrodiae_C368-T04_good_129.020
SRR6049662Rhizomagastrodiae_C368-T01_good_124.520
SRR6049663Rhizomagastrodiae_C368-T01_good_123.050
SRR6049664Rhizomagastrodiae_C368-T10_good_119.890
SRR6049665Rhizomagastrodiae_C368-T10_good_119.890
SRP279888GastroGastrodia elata tuber 41.75
JuvenJuvenile tuber27.03
Mother_GastroMother tuber of Gastrodia elata 29.33
Mother_JuvenMother tuber of Juvenile 35.33