Gene detail

Detail information of GWHGAAEX009072/evm.TU.scaffold_232.29

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743841727\|ref\|XP_010937605.1\|	4.71E-174	PREDICTED: telomere repeat-binding protein 5-like [Elaeis guineensis]
Swissprot	tr\|Q6R0E3\|TRP5_ARATH	2.00E-97	Telomere repeat-binding protein 5
trEMBL	tr\|M0TS84\|M0TS84_MUSAM	4.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P20810_001}
TAIR	AT1G07540	8.00E-96	TRF-like 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000240	564425	569547	+

Transcript Sequence
>GWHTAAEX009072 CGATCCGCTGGGTGTGGTGGAGAATTCTTTCTCATGTGAGAGATAGGGAGAGAAGAAGCAGAAGATTAAAAAAACACGCATAAAAGAAAGCCTTTTTTTAATTTTCTTTCAAAATGTTGAATTATTTGGGTGGATAAGTGCGTCAAGGAACAGAACTCTCGTTCCGATCGAGATTTAGGAGCGATTTCCGATCTGTTTGATCTACTGCGTTGGGCTGTTTCTCCGGCGATCCGATGCTTGCGCTGGAATCTGTGTGAATTTGGAGCTGTTCATTCAGAATCCGAGGTTTGCATAGGCGCTTTATTATGATCATTTCTTTAATCAGCTCCTAGAATTTGTTCTTTTACTGAATTCAAAAGAGATGGTCTTTCAAAAGAAGATGGGCACTGGATTCATTGGGTGCAAGATACCGACAATGCCGCGGTTCCCTCGATCGGCAAGGGGCAAGCGCTCTCGGCCGAAGAAGGTTGGAGGCAATGAAATGCATCCCTTCGACTTGCTTGCGGCTGTGGCAGGAGAGATATTATCAAAGAGGGAAAGCTCCTGTTCAATACATGAGAATGCAGAAGCGACCAGCCCTGTGAACAAGATTAAACGGGAGCAAATTGGGGATGTGAGCTTGTCTAAAAGTGATGTATTTGATCAGGGAAGCTGTGATGAAAGTAGCTTCGTAGCTAGATTCGGGTCTCATGAGGAAAGAGGTGCTGCGTCTGTGCTTGCGCTTGTGAAATCTGGTCTCAAGGGTGAATCTCAGAAGCTGAAGACAACTGGGTGTTTTACTACAAAGGAGGCAATAGAGTTCCATAATTGCAAAGCTCCAATGCATTTGGATGATGCTAAAGCTCCAGCTATAGTCAGTTCAGACAGCAGTGTCGAGATTCCTCCAAATGAAGATCATCACAGCGCTCTCAGCAGCTCCTTCCACTCAGCTGTGGACTGTATGGAACAGATTGTAGATAGAGATGATGACGAAAACTCTTCGGGGCGCACATTGAACTATTGGAAATCAGATCGAGAAGCAATGAATGATGGAGAGATATGGCATTGTGATGAAGAAATCAAGCGCGTTTTACGTCCCCGGAAGCTGTGTTATACTCGCCAAAGGTCACATAGGAGCTCACTTAAGAAGAGAATGTTTTCTGAGCACTGCTCATTTTCAGCTTCTAATGGAGGCTTTTGTGGCCAAGGTGCAACTGGTTCACCACTTAAAGATAATATTAAGTTAAATTCTAGTGATCCCCATTCTGATTTAAATGGTGCAGCTGGCAGGTCATGTTCCACAACAGGCCAAAGATTATCATATGAGTTAGCAGATCATACTGTGAAATTGAGCATCAAATCTTTTATGGTCCCTGAGCTCTTTGTTGATATCCCTGCAAACGCTACTGTTGGTTCCCTGAAGAGCGCTGTTACTGAGGCTGTGGCAGCCATACTTTATGGCGAGCTTCGCATCGGCGTGCTTCTCCATGGGAACAAGGTTCGTGATGACAACAAGACCCTGCGCCAGGCCGGAATTTCCGGCACTGCCGTGATCGACAATTTGGGTTTCGTATTAGAGCCAAACCTGGCTAGAACTCCGCCACCCCGAGATTCACACTCTTCTGAGCCAGAACCCATTAAAAACAATCCTACACATTCAGCTCCTGCTTCAGACCAAGCAATATCAGATAGAACTACTGCCCAACTTCTTCCCAGTACCACTTTAAACTGGACAGAAAGTAATTATGATTTGGCTCAGCCGTCGCCGGCAGATGAAATCTGCAATGAATCCAAAGCACTGGTTCCGAAGGCTCTTGCTGTAGTCCCTCTTCGCAGCTCGCGACGATCTGAGATGGCTCAGCGCCGGATCCGACGGCCATTCTCGGTCACAGAGGTGGAGGCTCTAGTGATGGCTGTCGAAAAGCTTGGAACAGGAAGGTGGCGAGATGTCAAGCTGAGAGCATTCGACAACATGAAACATCGAACCTACGTGGACCTCAAGGACAAGTGGAAGACGCTGGTGCACACGGCGAGGATATCGCCTCAGCAGAGAAGGGGTGAGCCGGTTCCGCAGGATCTGCTAGACCGGGTTCTCTCAGCCCACGCCTATTGGTCACAGCAGCAGTCCAAGGCTGCTGGGACCACAGATTCCCGTCTCATTCCTGCATAAAGCAAATCAAGCAAGCACAGAGATCAGTGCTTGCTTGTTCTGCTTGCTTTCAGGGAGTGGGCGAGAAATCTTTCCTGTAAAAAATGGTGCTTCGTCAAGGGAGCTGCTGGTTGCTGTACATTGAATAGAATTCATCGTATCTTGCTAACTGTTGATAAGAGGGAAATGCGCTTCTGAAAACTGTGATAGAAAGAGCAAAAATTCCATGATTTGTCTGATTTTATTATTTATTGGGGAAAGGGGGTAAAAAATAATAATAAAAGAATTGGGTAATATTTTTTTTCCTTTTTTGCTTGACTGATTTGGCGGAAGTATGATGTATTTATTGCTTAGTTTGTCCCACAATAGTTGAATTCTTTTATTCTTTTCCTGCTAGATATTATTTTGTTGTTCCAAAAATGCTAAATTTATTTCTTGAAAGACTCTCACAGGATGGGTATTGATGTATCGAAATCTAACCGCTAATTCGAGAGCCGTCCCAAATTTTATTTCTTGGATATACC

Network for GWHGAAEX009072

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.860
SRP064423	SRR2545915	Juvenile tuber	36.790
SRP108465	SRR5643513	five period of Gastrodia elata	34.240
	SRR5643514	five period of Gastrodia elata	31.560
	SRR5643515	five period of Gastrodia elata	41.040
	SRR5643524	five period of Gastrodia elata	29.000
	SRR5643525	five period of Gastrodia elata	89.610
	SRR5643528	five period of Gastrodia elata	54.690
	SRR5643658	five period of Gastrodia elata	89.830
	SRR5643659	five period of Gastrodia elata	27.350
	SRR5643660	five period of Gastrodia elata	21.660
	SRR5643661	five period of Gastrodia elata	23.630
	SRR5643662	five period of Gastrodia elata	29.060
	SRR5643663	five period of Gastrodia elata	24.610
	SRR5643664	five period of Gastrodia elata	35.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	54.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	65.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	78.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	59.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.310
SRP279888	Gastro	Gastrodia elata tuber	40.13
	Juven	Juvenile tuber	25.84
	Mother_Gastro	Mother tuber of Gastrodia elata	217.89
	Mother_Juven	Mother tuber of Juvenile	188.84