Gene detail

Detail information of GWHGAAEX009073/evm.TU.scaffold_232.31

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672122516\|ref\|XP_008784591.1\|	1.95E-177	PREDICTED: uncharacterized protein LOC103703501 [Phoenix dactylifera]
Swissprot	tr\|F4JH53\|FDM2_ARATH	2.00E-106	Factor of DNA methylation 2 {ECO:0000303\|PubMed:22302148}
trEMBL	tr\|M0UAC6\|M0UAC6_MUSAM	8.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP18670_001}
trEMBL	tr\|M0UAC6\|M0UAC6_MUSAM	7.00E-23	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP18670_001}
TAIR	AT1G15910	3.00E-103	XH/XS domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000240	575904	617457	-

Transcript Sequence
>GWHTAAEX009073 CAGCTCTCTCCATCCGGCCTCGACGTCACCGGTGCTAGACAACTGGCCATTTACCTTTCCCTTTTCTCTCTCCCTCTTCCTGTCATCCAACGGCCAGCCGCTGACCTCTCCTGCAGCCATCCAATTGCCGTCCGGCCACCGGCCAAGACTGACTAGCATGGAGAACTGTAATTGTGAATTTACAAACATTGAGAGAGGTAGTGCTGATGAAGAGACAATAAAACTTATGGAGAGAGATAAGGAGGCTGCTCTTTCTAGAATACTTTTTCTGGAGAAGGAACTGGATCAGAAGAAGAAAATGGAACTTGAAATTGCTCAGTTGAAAGGAAAATTAGAAGTTATAGAGCATTATTTGCAAGGGGAAGAAGATATATACAAGTTAATAGACAAAATTCATAAAAAAAGAGAAGAAGAAAAGAAAGGCTTAGACGTGGTGCATAGCACTCATTTGAGGGAGTGTAATTCCAACCAAAAGAACTATGAAGTTCGTGCAGAATTAGTTCAGGGGCTTACAAAAATGTTAAAAGATCCCAGTTTGATTGGATTAAAAAGAAGAAGTGATACTGATATTGAACATTTTGAAAGAGCATTTAAGAAGAAGGTTCTAACTGAAGATGCTGACATGAACAATTTTGAGTCAAGCTTTAACTGGGATGCGAAAATTTGGAATCCATCACAACATCCTTCCAAAATCGTTGTCCACAATGGACAAATTGATGGCTATCACTACTGGGATCTTCATCATGCAATTGGAAGCTGTTCTTCCGGTTCTCAAATGGCTATTGAGAAGGCTACCGACCCTGTGTTTTCTCAATCCATCCAGACTGACTCTACCGACATAATTGGGCACACCACTACACCATTGCCTGTGTCAGATCTGACATCATCCATCCTCAATTCTAGTTCGGATGAGCTCTTCCTTTGGCCTTGGGTGGGAGTGCTTGTCAATTTGCCTATGGAAGATGAAAATGTTTCGCTCAAAGAACAATTTTCAGAGTTTAACCCATTAAATGTCATCGTATCTTCTGAAAAGGACCCTGTAACAAGGAAAAATGAAGCTATTATTTTGTTTAATAGGGATTGGAGTGGCTACAAGGATGCAATGGCATTTGAGAATCATTTTAAGGTGCAGAGGATGGGGAAAAAGGAGTGGAATGAGAAGGGAGGTACGAACATGATTGGAATTTATGGGTGGATTGCTTGCGATGATGATTTTAAGTCAGATAAATTGTTTGTGAAGATTCTAAGGAAGAATGGGGAGTCAAAGACAGTGGCGGATGCGATGAAGGAGGCAAAGGAAAATGGTATAATGGTTGTTACACTTGTAAAGAAGATGGATGTAATGAATAAATATTTGCATAAGCTCAAGCACAAGTATATGGAGATGAACATCTCTCTTAAAAGCATGATGAATTCAAAAGGAAAGATTCTCCAAAAATATAATGAAGAAATGCATAATGTGAAGCAAAAAGGGCGTGAGAATGCACGCAGGTATTTGATGGAGAATGACAAGCTGAAGCTGGAGTTGAGTGCAAAGAAGAACGAGATTGAGCAATGTTGCAGAGAACTTAAAAAGTACGAGGAGAAAATTGATGATATCAGAAGGAATCTTGATGTCGAAAAGGAAAAGACTACAATGGCGAATGCTAAGCTTAAGCTGGCAACCACTGAGAGAAAGAGTGCTGCTGATGAAGGGATCAGCAAACTTTTGGATGAGCTAAAAAGAGAAAATGAAGTTGCTCTTGCCAGAATGCTCCAGCTTGAGAGGGAGTTGGATCAGAAGCAAGAGCTGGAACTTGAAATTGCTCAGGTGAAGGGTAAATTGAAAGTCATGGAACATTTATATGGCGAAGAAGACATTGACTCGAAGATTGAAGAAATTCGCAAAAAAGTCGAGGAAGACAGGGAATGCTCAGTGGAGCTGCACAACACTCTGTTGATGAAGGAGCATGAGTCCAACCAAGAGCTCAATGCAGCTCGTGCAGAACTGATCCAGGATCTCTCAAAATTGTTAAAGGGCCCCTCCTTGATTGGAATAAAAAGAATGGGCGATCTCGATATCAAGCCTTTTGAAAATGCGTGCCGGAAGAAGTTTCCCGCCGAAGTGGCCGGGATAAAGGCTTCGGAGTTGTGCTCTTCCTGGGATGAGCAAATTCGTAATCCATCTTGGCATCCTTTTAAAATCATCCAATGCGATGGCGAAACACAGGAGGTGATCGACGAGAATGACTCTAAACTGAAGAGTCTATGGATCGACTTCGGCGACGATGCGTACAATGCGGTGAAGAAAGCTCTGCTTGAGTTAAATGAGTACAATCCGAGCGGCCGATATCCTGTTCCGGAGCTGTGGAATTGGAAGGAGGAGCGAAAGGCGACGTTGAAGGAGACCGTACATTATGTCATCAAACAATTTAGACTTAGAAAATAA

Network for GWHGAAEX009073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03468.13	XS	251	354	9.10E-26
PF03469.13	XH	628	753	1.30E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0031047	Biological Process	gene silencing by RNA

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	60.020
SRP064423	SRR2545915	Juvenile tuber	54.590
SRP108465	SRR5643513	five period of Gastrodia elata	32.920
	SRR5643514	five period of Gastrodia elata	26.270
	SRR5643515	five period of Gastrodia elata	22.850
	SRR5643524	five period of Gastrodia elata	21.300
	SRR5643525	five period of Gastrodia elata	24.750
	SRR5643528	five period of Gastrodia elata	18.240
	SRR5643658	five period of Gastrodia elata	25.580
	SRR5643659	five period of Gastrodia elata	31.240
	SRR5643660	five period of Gastrodia elata	31.550
	SRR5643661	five period of Gastrodia elata	27.700
	SRR5643662	five period of Gastrodia elata	37.240
	SRR5643663	five period of Gastrodia elata	44.840
	SRR5643664	five period of Gastrodia elata	37.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	58.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	82.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	49.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.530
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.420
SRP279888	Gastro	Gastrodia elata tuber	28.86
	Juven	Juvenile tuber	41.87
	Mother_Gastro	Mother tuber of Gastrodia elata	14.96
	Mother_Juven	Mother tuber of Juvenile	23.33