Gene detail

Detail information of GWHGAAEX009075/evm.TU.scaffold_232.34

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672122516\|ref\|XP_008784591.1\|	0	PREDICTED: uncharacterized protein LOC103703501 [Phoenix dactylifera]
Swissprot	tr\|F4JH53\|FDM2_ARATH	1.00E-151	Factor of DNA methylation 2 {ECO:0000303\|PubMed:22302148}
trEMBL	tr\|M0UAC6\|M0UAC6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP18670_001}
TAIR	AT1G15910	1.00E-150	XH/XS domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000240	659920	664480	-

Transcript Sequence
>GWHTAAEX009075 GAAAATTCTCGAAATCATAATTATGGTGTTCTCACCCAAACGGTGAGTGCAGCAGGAAAATCCAAAAGCTCCAAAGCCCCGAGAAAGCTGAAATGGCTACTGTTGCTCAAACTTCTACGGATTCACTCCTTGCGTATATTCCACTGATCTACATTTACGCATCGCAAAACCCTAACCCCGCTTCACTGAAATCTACGGCAATCCTTCTTTCTCCTCATTGCCCCAATGGCCGGCAGCTACTCCGACGACGATTCAGATTCAGAGTTCAGCGAATCCGAGCTCGACGATTACGCTGAAAAAGCTTACATGATGCTCAAAAACCTAAATTATCGAATTCTAAACCCCGACGGAACCATGCGCTGCCCTTTCTGCGTTGGCCAGAAGAAACAGGACTATCGGTACAAAGATCTTCTTCAGCACGCAGTTGGAAGAGGCTCCTCTACGTCCAGAAAGGCCAAAGAGAAGGCTAACCACCTCGGCTTCGCTCGGTTCCTTCAGAACGATCTAGCTCTTGCTGCTGGCCCTGTAGCCCCTCCTCCTCCACCTGCCTCGGAGCCGACATCTTCCAATTCCAATTCGAGCTCAGAGGAGCTCTTTGTGTGGCCTTGGATGGGAATGCTTGTCAATCTGCCTGAGGAAGATGAAGGCGTTCCCCTCAAAGAGCAATTTTCAGAGTTCAATCCGGTAAACATGATTGTTTCTCCTGAGAGAGATCCTGAATCAGGCAAGGGCGAGGCTGTGATTTGGTTTAACAGGCATTGGGGAGGGTTCAAGGATGCAATGGCCTTTGAAAATTGCTTTAAGGCAAAGCGGATGGGGAAAAAGGATTGGATTGAGAAGAAAGGCCCTGACTTGGCCGGGATTTATGGGTGGATTGCTCGCGACGATGATTATAATTCTGATAGGCTGGTTTCCAAGATTCTGCGGAAGCACGGGGAATTGAAGACCGTTGAAGATGTCACAGAGGAGGAGGCTAGGGAGAATGGCATGATGGTGGCCGCTCTTGCAAAGAAGATGGAAGTGAGGAATAATTATTTGCAGGAGTTGGTGTGCAGATATAATGAAACAAGCATTTCACTTAAAAACTTGATGGATTCTAAGTCAAAGATTTTACAGGAGTATAATGAAGAAATGCATAATGTTCAGAGGAAAGCACGAGAGAACGCAAGGAAGATTTTGATGGAGAATGATAAGTTGAAGCTGGAATTGGAATCGAAGAAGAAAGAGCTTGAGCAACGGTGCAAAGAGCTTAATAAGTATGAGGCCAAAAATGATGGTGAGAAAAGGAACATCGACATTGAGAAAGAAAAGACTGCTCTGGAGAATACTAATCTCGAATTAGCAACTATTGAAAAAGAGAAGGCTGATGAAGAGGTCAAGCAACTTATGGAGGAACAGAAGAGAGAGAAAGAAGTTGCTCTTGCAAGAATTCTTCAGTTAGAAAGAGAACTGGATCAAAAGCAAAAGCTGGAGCTTGAAATTGCTCAGTTGAAAGGTAAATTGAAAGTCATGGAGCATTTGCAAGGGGAAGAAGATATAGATAAGAAAATAGAAGAAATTCATAAAAAGCTGGAGGAAGACAAGGAAAATTTAGAAGAGCTGCATAACACTCTTTTTATGAAGGAGCGGGAGGCCAATCAGGAGCTCAATGAAGCACGTGCCGAACTGATCAAGGGTCTTTCAAAATTGTTGAAAGGTCCCACCTTAATTGGAATAAAAAGAATGGGCGATCTAGACATTAAACCGTTCGAAAGTGCCTGCAAGAAGAAGTATCCAGCTGAAGATGCCGACATCAAAGCTTCGGAATTATGTTCAAGCTGGGATGAGCAAATTCGTAATCCGACATGGCATCCATTTAAAATCATCGAATGTGAAGGTGGAAATGAGGAAGTAATCGATGAAAAGGATTCAAAACTGAAGAACCTGTGGTTGGAGTTTGGGGATGATGTGTACAATGCAGTGAAGAAGGCTTTGCTTGAGATAAATGAGTACAATCCAAGTGGACGATATCCTGTATCTGAACTGTGGAATTGCAAGGAGGAGCGAAAGGCGTCGATGAAGGAGGTCATTCATTACATCGTTAAACAATTTAAGGCTCGCAAAGCTCGTAGATGATTTTTATTCTGATGGTTAAAAACAGCTTGACCCTAATTCTTGCTTCAGGTCTCATGAGTTGCTATTTATGTTGTTCCTATGCAGACACTGCTCTGAAACTTTGTCTTTCAAGTCGTCTTCTTGGCTTCAATGTTTTCCCAATGCCATTTTATCAAATGTCATGTGCTGAGGGAATGATTTGTTTAGTTGCCGAGTTTATGATAAGATAAAATTTTGCAGGCT

Network for GWHGAAEX009075

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03470.13	zf-XS	46	87	3.30E-17
PF03468.13	XS	121	225	9.30E-26
PF03469.13	XH	498	627	2.60E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0031047	Biological Process	gene silencing by RNA

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	85.150
SRP064423	SRR2545915	Juvenile tuber	60.570
SRP108465	SRR5643513	five period of Gastrodia elata	43.470
	SRR5643514	five period of Gastrodia elata	43.510
	SRR5643515	five period of Gastrodia elata	31.370
	SRR5643524	five period of Gastrodia elata	37.820
	SRR5643525	five period of Gastrodia elata	17.300
	SRR5643528	five period of Gastrodia elata	10.010
	SRR5643658	five period of Gastrodia elata	13.770
	SRR5643659	five period of Gastrodia elata	72.540
	SRR5643660	five period of Gastrodia elata	84.750
	SRR5643661	five period of Gastrodia elata	66.880
	SRR5643662	five period of Gastrodia elata	62.430
	SRR5643663	five period of Gastrodia elata	77.700
	SRR5643664	five period of Gastrodia elata	76.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	65.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	56.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	63.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	62.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.800
SRP279888	Gastro	Gastrodia elata tuber	49.13
	Juven	Juvenile tuber	84.37
	Mother_Gastro	Mother tuber of Gastrodia elata	13.45
	Mother_Juven	Mother tuber of Juvenile	29.06