Detail information of GWHGAAEX009076/evm.TU.scaffold_232.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479131540|ref|YP_005071500.1| | 4.00E-127 | ribosomal RNA large subunit methyltransferase N [Arthrospira platensis NIES-39] |
| nr | gi|695067444|ref|XP_009380639.1| | 0 | PREDICTED: uncharacterized protein LOC103968982 isoform X1 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0RKJ1|M0RKJ1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P22660_001} |
| TAIR | AT2G39670 | 0 | Radical SAM superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000240 | 668135 | 678488 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009076
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04055.20 | Radical_SAM | 156 | 318 | 9.20E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006364 | Biological Process | rRNA processing |
| GO:0070475 | Biological Process | rRNA base methylation |
| GO:0030488 | Biological Process | tRNA methylation |
| GO:0008173 | Molecular Function | RNA methyltransferase activity |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.940 |
| SRR2545915 | Juvenile tuber | 13.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.440 |
| SRR5643514 | five period of Gastrodia elata | 20.610 | |
| SRR5643515 | five period of Gastrodia elata | 15.550 | |
| SRR5643524 | five period of Gastrodia elata | 16.800 | |
| SRR5643525 | five period of Gastrodia elata | 8.210 | |
| SRR5643528 | five period of Gastrodia elata | 8.460 | |
| SRR5643658 | five period of Gastrodia elata | 5.980 | |
| SRR5643659 | five period of Gastrodia elata | 22.590 | |
| SRR5643660 | five period of Gastrodia elata | 22.730 | |
| SRR5643661 | five period of Gastrodia elata | 20.260 | |
| SRR5643662 | five period of Gastrodia elata | 19.440 | |
| SRR5643663 | five period of Gastrodia elata | 21.190 | |
| SRR5643664 | five period of Gastrodia elata | 19.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.66 |
| Juven | Juvenile tuber | 25.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.77 | |
| Mother_Juven | Mother tuber of Juvenile | 17.63 |