Detail information of GWHGAAEX009088/evm.TU.scaffold_233.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|332685997|ref|YP_004455771.1|8.00E-38polygalacturonase [Melissococcus plutonius ATCC 35311]
nrgi|695080869|ref|XP_009387922.1|1.80E-121PREDICTED: probable polygalacturonase [Musa acuminata subsp. malaccensis]
Swissprottr|A7PZL3|PGLR_VITVI2.00E-80Probable polygalacturonase
trEMBLtr|Q75LI0|Q75LI0_ORYSJ9.00E-121cDNA clone:J013058D09, full insert sequence {ECO:0000313|EMBL:BAG89866.1}
TAIRAT3G621105.00E-112Pectin lyase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000235213360230810-
Transcript Sequence

Network for GWHGAAEX009088

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12708.6Pectate_lyase_31492039.10E-07
PF00295.16Glyco_hydro_282443456.50E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004650Molecular Functionpolygalacturonase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.350
SRR2545915Juvenile tuber29.920
SRP108465SRR5643513five period of Gastrodia elata23.460
SRR5643514five period of Gastrodia elata19.420
SRR5643515five period of Gastrodia elata21.880
SRR5643524five period of Gastrodia elata21.140
SRR5643525five period of Gastrodia elata24.120
SRR5643528five period of Gastrodia elata21.070
SRR5643658five period of Gastrodia elata26.760
SRR5643659five period of Gastrodia elata29.020
SRR5643660five period of Gastrodia elata24.870
SRR5643661five period of Gastrodia elata24.270
SRR5643662five period of Gastrodia elata20.330
SRR5643663five period of Gastrodia elata24.180
SRR5643664five period of Gastrodia elata21.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.750
SRR6049655Rhizomagastrodiae_C368-T10_good_125.480
SRR6049656Rhizomagastrodiae_C368-T07_good_122.200
SRR6049657Rhizomagastrodiae_C368-T07_good_124.540
SRR6049658Rhizomagastrodiae_C368-T04_good_121.320
SRR6049659Rhizomagastrodiae_C368-T04_good_125.250
SRR6049660Rhizomagastrodiae_C368-T01_good_122.440
SRR6049661Rhizomagastrodiae_C368-T04_good_121.520
SRR6049662Rhizomagastrodiae_C368-T01_good_119.590
SRR6049663Rhizomagastrodiae_C368-T01_good_119.110
SRR6049664Rhizomagastrodiae_C368-T10_good_122.720
SRR6049665Rhizomagastrodiae_C368-T10_good_122.720
SRP279888GastroGastrodia elata tuber 25.54
JuvenJuvenile tuber37.22
Mother_GastroMother tuber of Gastrodia elata 17.75
Mother_JuvenMother tuber of Juvenile 27.51