Detail information of GWHGAAEX009089/evm.TU.scaffold_233.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15668196|ref|NP_246988.1| | 5.00E-20 | RNA 3'-terminal-phosphate cyclase [Methanocaldococcus jannaschii DSM 2661] |
| KOG | KOG3980 | 1.00E-97 | RNA 3'-terminal phosphate cyclase |
| nr | gi|743768993|ref|XP_010914776.1| | 0 | PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Elaeis guineensis] |
| Swissprot | tr|Q9C578|RCL1_ARATH | 2.00E-162 | Probable RNA 3'-terminal phosphate cyclase-like protein |
| trEMBL | tr|M0SBD6|M0SBD6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P03180_001} |
| TAIR | HS21361285 | 1.00E-97 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000235 | 285171 | 300588 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009089
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01137.20 | RTC | 7 | 352 | 2.90E-54 |
| PF05189.12 | RTC_insert | 183 | 298 | 1.20E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11108 | RCL1 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042254 | Biological Process | ribosome biogenesis |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0005730 | Cellular Component | nucleolus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.950 |
| SRR2545915 | Juvenile tuber | 35.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.110 |
| SRR5643514 | five period of Gastrodia elata | 34.410 | |
| SRR5643515 | five period of Gastrodia elata | 37.870 | |
| SRR5643524 | five period of Gastrodia elata | 35.610 | |
| SRR5643525 | five period of Gastrodia elata | 47.090 | |
| SRR5643528 | five period of Gastrodia elata | 51.010 | |
| SRR5643658 | five period of Gastrodia elata | 38.950 | |
| SRR5643659 | five period of Gastrodia elata | 52.960 | |
| SRR5643660 | five period of Gastrodia elata | 53.120 | |
| SRR5643661 | five period of Gastrodia elata | 53.120 | |
| SRR5643662 | five period of Gastrodia elata | 54.350 | |
| SRR5643663 | five period of Gastrodia elata | 50.730 | |
| SRR5643664 | five period of Gastrodia elata | 49.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 49.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 62.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 52.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 51.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 51.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 64.42 |
| Juven | Juvenile tuber | 78.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.43 | |
| Mother_Juven | Mother tuber of Juvenile | 52.61 |