Gene detail

Detail information of GWHGAAEX009095/evm.TU.scaffold_234.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186681165\|ref\|YP_001864361.1\|	8.00E-14	hypothetical protein Npun_R0666 [Nostoc punctiforme PCC 73102]
KOG	KOG1127	0	TPR repeat-containing protein
nr	gi\|743821936\|ref\|XP_010932168.1\|	0	PREDICTED: uncharacterized protein LOC105052889 [Elaeis guineensis]
Swissprot	tr\|O23052\|Y1515_ARATH	2.00E-07	Uncharacterized TPR repeat-containing protein At1g05150
trEMBL	tr\|F6I6X8\|F6I6X8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62696.1}
TAIR	AT1G76630	0	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000230	301695	351208	+

Transcript Sequence
>GWHTAAEX009095 AAACAAACAGCCCCTAAGAAACGTCATCCGTTCGAATTTTCATTTTGAGCAACAGCGCACGCTGGGGTTGTAACCGCCCTCAGTTCTCATTGTCGATGACGGGTGATGGAGATCTTATTTCTCAGCTGCAACAAACACTGAATTCCGATCCGGAAAACCCTTCCCACCAGTTCAATATTGGCATCCTATGTTGGAGGAAGGGAGATGAGGTTGGCGGGGACGAGTCCCTGGGCTTTAAATCTAAGGCTGTGGAGCATTTTCTGGCGTCTGCAAGGCTAAACCCTAGGGACGGCGCCACTTTTCGGTATCTAGGGCATTATTACAGCGCAGTCGTGGTTGATCATCAAAGGGCCTTTAAGTGCTACGAAAGGGCCCTTTCCCTCTGTCCGGATGATTTCGAAGCTGGCGATGCATTTTGTGACTTGTTGGATGCATGTGGGAAGGAGAGCCTTGAGATTGCCGTGTGCAAAGAAGCGTCTGAGAGATCTCCAAGAGCTTTTTGGGCGTTTAGGAGGCTGGGATACCTTCAGGTTTCAATACATTGTTTGTCAATTATTTCAGTCCACTGTAAGAAGTGGGAGGAGGCAGTGCGGAGCCTTCAGCATGCAATCCGAGGCTATCCATCATGTGCTGATTTGTGGGAAGCATTAGGTCTTGCATACCATCGGTTGGGCAGGCTAACTGCAGCAATTAAGTCATATGGGCGCGCAATTGATCTAGAGGGTTCAAGAATCTTTTCATTAATTGAAAGCGGTAACATTCTTCTGATGCTTGGCTCTTTTCAAAAGGGAATTGAGTTTTTCCGGCTTGCTTTAAAAGTATACCCTCATAATGTGTCAGCACACTTTGGGCTTGCTTCTGGTCTCCTTGGGCTATCAAAGGAATGTGCTACTATCGGATCATATGAATGGTGCGCCTCTCTTTTGAAGGATGCTTCAGAAGTTGTTAGAGCTTGCTCTAGGCTATCAAGCAATTTTTCTTCAGTCTGGAAATTACATGGAGACATTCAGATTGCATATGCAAAATGGTTATCGTTGGAGAGCAAATTTTTTAGCACCTACATTGATGAAGGGGATTTCAAATCATGTCTCAATGAATGGAAAAATAGTTGTCTTTCAGCAGCAAAATGTGCTAGAAATTTGTATCAAAGAGCTTTACACTTGTCCCCATGGCAATCCAATCTCTATGCTGATATCGCAATCGCTCTGGATCTCATTTGTTCCTTGGAAGAGAGAAAGAAAACAGATCATGATATTCTGCAATTATCCGAGAGGATGTCTTTGGGTAGCTTAGTATTTGAGGGAGTTAATTGTGAGTTTTGGGTCATACTGGCTTGTGTAACCAATAATTCTGCATTAAAGCAGCATGCTCTTATTAGGGGACTGCAACTTGATATTTCTTTGGCTGTATCTTGGGCATACCTTGGGAAGCTATACATAAAACTGGGCGAAAGCCAATTTGCTATTCAAGCATTTGATCGTGCTAGAAGCTTAGATCACTCCTTAGCATTACCATGGGCTGGTATGTCAGTAGCTTCTCATGACCGGAACCACTCCCTGAGTGAAGCTTTTGAAAGCTGCCTAAGAGCTGTTCAGATAATGCCCCTTGCAGAGTTTCAGATTGGTCTTGGTATATTGGCCGTTCTCTGTGGTCATTTATCATCTCCACAGGTGCTTGCGGCAGTACGCCATTCTATTCAACAGTCGCCTTATTATCCAGAATCACATAATATACATGGAATAATCTGTGAATCATTATCAGATTATGAATCTGCAATATCTTCATATCGTAATGCAAGATCTGCGCTTAAGATTTCTCCAATCTCTCAAGAAGCTGTTAGAACTTGTTTAACTGATATATCTGTTAATCTTGCTAGGGCACTTTGTAAGGCTGGGCAGATGCTTGAGGCAGAACAGGAATGCGAAGCTTTGGATAAAGATGGTACGCTTAATTGCAAGGGCTTGCAAATATATGCTGTTACACTTTGGAAACTGGAAAAAAATGACCAAGCTCTCCAAGTGGCAAGAAATTTGGCTAAGAATGTATCAACCATGGAGAAAACTTCTTGTACTGTTGCTATTGGTTTAATATGCCAGTTGATTTATCGTATTTCTGGTATAGAATCTGCAGTTTCAACGATATTGAAATTGCCTAGGGAATACATGAATGAAGCAAAAATGTGTTTGAAAATTTCTGCAGTAAATGCTTTAGATCCAAATAATCGGTTACTGTTGCTTCTTTCCACTAATCTTAACTCGTTTGATACTTATGATTTGGTTGCTGAATTACATACGATAACATCTATGAGTGAAATGATCCAAAAAGGCTCAGAACAGTCTCTTGATGTTTACAGCGGTGTTAAATATCTGAGAAGAATTCTTCATATGTATCCTGACAGCAAATTACTGAGAAACCATCTTGGATCACTTCTATTACATTCTGGTGATTGGCTGACTTCTCACATAGCACCAAGGTGCAGCGGCATACCAACAGGACACCCTGCAAGGACCGTCTTAAAATCACCATTTGAAATCCATGGTCGTGCCGGAATTGCCTGTTACTCAAGCTGCATAACAAGGCCTAAATTTTCTTTCCCTACTTGCCATTACCAGCCTACGCATGGTTCACCTGTGACTGAGTATATGCAAAAATGGTTACATCAAGAACCATGGAATCATGAGGCGCGTTATTTTCTTATACTTAATGTTCTGCAGAGAGCCCGTGAAGAGAAGTTTCCTCCACATCTTTGCACTGCTTTGAAACGTTTGATTTCCATTGCTCTCAAAAATGAGGCGTTGATGATGAATGAAATTAACAAGTATCAGAGGTTCCTACTGCTGCTATCCGCATCTGAGGTCAGTTTACAGTGTTTGGATTATGCTGCCAGTATGACATATGCCGCATCTGCATTAGGAGTTTTTCCATGCTGTGTCAATTCTTTCTTTGCGCACCTGCAACTTTGCCGTACCTATGCTGCACAAGAGGATTTAATGAATCTAAAAAATGAGTATATGAATTGCTTAAAATTTAAGCCTGCCAATTTCATTGGTTGGGTTTCCCTAAAATTCCTTGAATCCAGATATAAATTGCAGAGCTGTTATGACACAGTTGATGTGAATTATAAGATGAGCCTCACAGCAGAACTGAGTTCGTCCGCTTGCCTGTGGGAAGCTATCTTTGGATTAGTAAGTGCTCTGTGCTTCAAATGGGATGAGGATTTTATCAGTGCAGAACAAGCTTTAGCGCGTGCATCTGCCATGTCCAAAGCAGAAAGCTGCCTTTTTCTTGCTCATGGTGCAATGTGCATGGAGCTAGCTCGGAGACAAATGGGCTTGCATTTCTTGACACGTGCTGTGAAGTGTCTGACCAAGGCCCGATCGATTTCGCCGTTTCCTTTTCCCATTCTTTCGGCATTATTGGCTCAAGCAGAGGGAAGCTTTGGTGCAAAAGTCAAGTGGGAAAGTAATCTGCGTCTCGAATGGTTTTCCTGGCCAGCAGAAATGAGGCCGGCGGAATTGTACTTCCAAATGCATGCTCTTGCCAAACAGACGGCTGCGGCCAATGACCGGCAAGTGAACATAGAATTGTGCCAAAGCCCTGAGAGGTGGGCTCTTCGAGCTGTGCATTTGAATCCTTCTTGTTTTAGGTACTGGAAGGTAATACGCAGCAGCTCACTGATAAATAATGACACCTAAAATTCTTGTATGTAAATGGTGATAATTGAGTTTTGTTCAGGCTCTTAATCTCAATATTCTTTCTAACATCATTTTTATTTTATATGTTCTTTATCAATGATAATGATATAGCTTGCAGTGTACACTTTTAAGCCCGAATGGAGGAGCCATTGTTTCAATTTGGATGTGTTATTTGGGGATATAAACTGGATTAATATTAAAGATATAG

Network for GWHGAAEX009095

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13432.5	TPR_16	159	205	1.40E-06

Protein Sequence

>GWHPAAEX009095
MTGDGDLISQLQQTLNSDPENPSHQFNIGILCWRKGDEVGGDESLGFKSKAVEHFLASARLNPRDGATFRYLGHYYSAVVVDHQRAFKCYERALSLCPDDFEAGDAFCDLLDACGKESLEIAVCKEASERSPRAFWAFRRLGYLQVSIHCLSIISVHCKKWEEAVRSLQHAIRGYPSCADLWEALGLAYHRLGRLTAAIKSYGRAIDLEGSRIFSLIESGNILLMLGSFQKGIEFFRLALKVYPHNVSAHFGLASGLLGLSKECATIGSYEWCASLLKDASEVVRACSRLSSNFSSVWKLHGDIQIAYAKWLSLESKFFSTYIDEGDFKSCLNEWKNSCLSAAKCARNLYQRALHLSPWQSNLYADIAIALDLICSLEERKKTDHDILQLSERMSLGSLVFEGVNCEFWVILACVTNNSALKQHALIRGLQLDISLAVSWAYLGKLYIKLGESQFAIQAFDRARSLDHSLALPWAGMSVASHDRNHSLSEAFESCLRAVQIMPLAEFQIGLGILAVLCGHLSSPQVLAAVRHSIQQSPYYPESHNIHGIICESLSDYESAISSYRNARSALKISPISQEAVRTCLTDISVNLARALCKAGQMLEAEQECEALDKDGTLNCKGLQIYAVTLWKLEKNDQALQVARNLAKNVSTMEKTSCTVAIGLICQLIYRISGIESAVSTILKLPREYMNEAKMCLKISAVNALDPNNRLLLLLSTNLNSFDTYDLVAELHTITSMSEMIQKGSEQSLDVYSGVKYLRRILHMYPDSKLLRNHLGSLLLHSGDWLTSHIAPRCSGIPTGHPARTVLKSPFEIHGRAGIACYSSCITRPKFSFPTCHYQPTHGSPVTEYMQKWLHQEPWNHEARYFLILNVLQRAREEKFPPHLCTALKRLISIALKNEALMMNEINKYQRFLLLLSASEVSLQCLDYAASMTYAASALGVFPCCVNSFFAHLQLCRTYAAQEDLMNLKNEYMNCLKFKPANFIGWVSLKFLESRYKLQSCYDTVDVNYKMSLTAELSSSACLWEAIFGLVSALCFKWDEDFISAEQALARASAMSKAESCLFLAHGAMCMELARRQMGLHFLTRAVKCLTKARSISPFPFPILSALLAQAEGSFGAKVKWESNLRLEWFSWPAEMRPAELYFQMHALAKQTAAANDRQVNIELCQSPERWALRAVHLNPSCFRYWKVIRSSSLINNDT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12600	SKI3, TTC37	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.280
SRP064423	SRR2545915	Juvenile tuber	17.100
SRP108465	SRR5643513	five period of Gastrodia elata	11.700
	SRR5643514	five period of Gastrodia elata	10.440
	SRR5643515	five period of Gastrodia elata	9.830
	SRR5643524	five period of Gastrodia elata	10.530
	SRR5643525	five period of Gastrodia elata	11.550
	SRR5643528	five period of Gastrodia elata	11.730
	SRR5643658	five period of Gastrodia elata	13.170
	SRR5643659	five period of Gastrodia elata	10.410
	SRR5643660	five period of Gastrodia elata	9.960
	SRR5643661	five period of Gastrodia elata	9.450
	SRR5643662	five period of Gastrodia elata	10.600
	SRR5643663	five period of Gastrodia elata	10.650
	SRR5643664	five period of Gastrodia elata	10.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.070
SRP279888	Gastro	Gastrodia elata tuber	16.94
	Juven	Juvenile tuber	17.76
	Mother_Gastro	Mother tuber of Gastrodia elata	18.61
	Mother_Juven	Mother tuber of Juvenile	21.15