Gene detail

Detail information of GWHGAAEX009096/evm.TU.scaffold_234.5

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0701	dsRNA-specific nuclease Dicer and related ribonucleases
nr	gi\|672133936\|ref\|XP_008790606.1\|	PREDICTED: putative metallophosphoesterase At3g03305 [Phoenix dactylifera]
Swissprot	tr\|Q0WVZ1\|Y3330_ARATH	Putative metallophosphoesterase At3g03305 (Precursor)
trEMBL	tr\|J3L6N4\|J3L6N4_ORYBR	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB01G48900.1}
TAIR	AT3G03300	dicer-like 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000230	642337	658251	+

Transcript Sequence
>GWHTAAEX009096 CTAATTCAGACTTACTTCCTTTCTTTTCTTCATTCTTAAAGGAACAGAACAATATATCCACTTCCAAACCAACCCAGCAGGCTCTTCTGTAAGCCTGGATTGGGCACTCCAGGATCATCGAGATTCCAAAGCAAGACAGCTGGTTCTCGGGGCCAGATTAGTTGAGGATCACTGAAGTGCAATGGCTATGGCTGCATGCGCATTTATTTTTCTTATTCTCATCCTGCCATCCGTCTCCGTCTCCTCTCCCGACCACCAGGGGACAGTGATCGAATTGAAGGGCGGGCCGGACGGCGTTGTGTGGGTTGTCCAGCTCTCTGATCTCCACTTTAGTATATTTCACCCTGAGAGAGCTCTTGATTTCAGAATGCTTATTGGCCCCGCCCTCTCTATGATCATCCCGTCTCTCGTTCTCATCACTGGCGACCTCACGGACGGAAAAAGCAAAGATTTGTTAACAATGAAACAAGAAGAAGCTGAATGGATAGAGTACCAAAATGTGACGGATGACGTAATCATGAGGAGTGGGTTGGATAAGAAGGTTTTTTATGATCTTAGGGGAAATCATGATAGTTTTGGGGTGCCAGAAGTTGGCGGCAAATATGATTTTTACAGAAAGTATAGTATCAATGCACGACTAAAACGCCAGGGAAATATCCAGAGCGTCACATTACAGCATGGAGAAAGGAAGCATATTTTTGTTGGAGTTGATAGCGCCATGGAAATTGGCCCTCGTGGCCCCACAAATCTATTTGGGCATCCGACGAAGAAGTTGCTTGCAGATTTAGACGCGGAACTCGGTCAGTGGGATAACGAATCCTTGCTGCCCGTAACTAAAATCTCCTTTGGGCATTTTCCCTCGTCATTTACAGCAATGGCAGAAACGGGGAAATATGTAAAAGACGTGTTCCTTAAACATTCCTTGTCAGCTTACCTTTGCGGCCATCTGCACACCCGGTTTGGAAAAAACCTGAAGCGTCATCATCATGCCAAGCCAAAAGAAACATTTTACGAGCTAAACATGCATCAAGGAAATCGTAACAATAAAGTTATTGAAAATTGTTCTGCAAACGCTGAGGAACCCCCTAAAGAGTTCTGGGAGTGGGAGATGGGCGACTGGAGAAGAAGCAGAAGCCTCAGGATTGTCGCGATTGATTCCGGTTACGTTTCCTTTTTAGATATTGATTATCGGTCGGGATTCAAGGACACTATAATCTTTCCCACATTTCCTTTGGACTCGAGATTTATGAACAGAATTTCATCTCCTCGTGACTTCCATTGCCCATCTGCAGGAAGCTCATCGCACGAAACAGTAAGAGCCCTAGTTTTTTCAAGAAGAGTGATAGTTTCTGTTTCAATGAAAATATATGATTCCAGGTCTGGCCATTTTGATTTGGTATTAGAAGAAGACATGATGAAACTGAAAAAGGGTTATGAAATCAGGGGTGACGTGTACGTGGCTTCATGGAATTGGAGGGCTTTTGCTGACCCATCTCCAAGCCGATTTTGGTTGCAAATTGAAGCAACTGATGCTTCTGGAAAATCTACTTCGAGTGAGCTGCGGCCATTTTCGGTCAATGGGCAAACTGCAGACGTCAGCTGGACGTGGAAAGAATTTATTGTGATGGGGGTTCAGTGGACCGTCCTGTATTGCCCTCTTCTGCATATTTTACTAACCCTTCTCTTTGTACTGCTCCTCACTCCACAGGCTTTTCTCATTTTCTTTAAGAATTGTATGGCTTGCAATCAGAAGAGCGTTTGGGCCTGCTTCATTGACATTGGAATCTTTGTTTTGGTAGAGCTTTGCCGGTCAATAGAAATATGGTCGGGAATTCTCTTATATTTGCTCTACCTCGTGTTTTTTCCTTGGTTTTTTGGTCATATGTATTCTGATGATGATGGGAGGAATATGTCTTACATGACCCATAGTGGGTGGGCTGTTCCTTCTTCCACAAATGGAAGTAGAAATGCTTATATCGGTGCGCCGGATATAATGGTGATTGTTCTGCCACATCTTGGTTTAGTTGTTTTGCCGACAGTTCTTGTCGTAGGCGCAATGGCAGCAGAAAGAACGAAGCGCCAGGCGCATTCACGCTCACTTTATAGTAAGAAGGAAGATAACTGTTTCAGAGAGAGCGTGAGCCAGGGCCTTTCTGTTGCGTTTGGGTTTTGGAGCAGGCGCAGGATGAGAAAGTTACTGTTACTGGCCTGCATACCAATATCTTGGAGGCACTTGAAGCAATGCAGAGCGCTTGTGAAGGCATATGAGATGAATCCATTCTTCGACGCGCCTATTTTCTGCTTCGGGATCCCACTGCTATTGGTTGGCGCAATTTACAGGACAGCCGCATGACTGATCCCTTCCCGCATTTGATAATCCACAACTGGGTTCGTCCCACTTAGTCAGGCATGGAATCTGTGCAGATCTAAATATTTTAGGTCCACATAAATCATTCTTATTTAGATGAAGAATTTAGCGCTGCTTTTTTTTTTTTCTTAATGTTTCTTTTCCCTGTCACATCAAATTCATGTTCATAATGAGGCACACACAATATTCTGCATTAACAATTTGTTCCCATTCAATTCATATCACTCAGTCTATGGTATTATTAATGTATATTGCAACAAAAAGAAATAAATCAACTTCAGGAGCTAGACATCTTGCTTAGCCAGGAGGCA

Network for GWHGAAEX009096

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.27	Metallophos	41	258	2.00E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.510
SRP064423	SRR2545915	Juvenile tuber	8.470
SRP108465	SRR5643513	five period of Gastrodia elata	14.760
	SRR5643514	five period of Gastrodia elata	11.960
	SRR5643515	five period of Gastrodia elata	13.240
	SRR5643524	five period of Gastrodia elata	12.470
	SRR5643525	five period of Gastrodia elata	10.420
	SRR5643528	five period of Gastrodia elata	10.170
	SRR5643658	five period of Gastrodia elata	14.550
	SRR5643659	five period of Gastrodia elata	9.740
	SRR5643660	five period of Gastrodia elata	9.340
	SRR5643661	five period of Gastrodia elata	10.300
	SRR5643662	five period of Gastrodia elata	9.390
	SRR5643663	five period of Gastrodia elata	10.960
	SRR5643664	five period of Gastrodia elata	7.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.450
SRP279888	Gastro	Gastrodia elata tuber	6.40
	Juven	Juvenile tuber	11.08
	Mother_Gastro	Mother tuber of Gastrodia elata	7.96
	Mother_Juven	Mother tuber of Juvenile	7.45