Gene detail

Detail information of GWHGAAEX009098/CADD00716.2.gene

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0698	1.00E-23	Serine/threonine protein phosphatase
nr	gi\|593795606\|ref\|XP_007160841.1\|	1.41E-25	hypothetical protein PHAVU_001G021200g [Phaseolus vulgaris]
Swissprot	tr\|Q9FX08\|P2C12_ARATH	1.00E-24	Probable protein phosphatase 2C 12
trEMBL	tr\|V7CU79\|V7CU79_PHAVU	5.00E-26	Uncharacterized protein {ECO:0000313\|EMBL:ESW32835.1}
TAIR	AT1G47380	1.00E-23	Protein phosphatase 2C family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000230	719481	723880	-

Transcript Sequence
>GWHTAAEX009098 AAAAAGTTAATATGCAGTTAACTGAAGCTATCGGGCGGGCAATGGCGGCGCAGACGCACATCTCTCTCTCGTTCTTTCTGGTCGATCCTGCTCTCGTTCTTTTTCTGCGGCGACAGCAACTAGAAGCTGCTTCCTTCCCTTGTCCGCTTAAGTTCTATCCCACGCACGCACAGCAACGAGCACTGCGCCTACCCTCCTTCCGTCGTCACAATGAAGCTTCTATGCGAAAGTCCCGGCAATGGAAACGCCGAAGCATCTTCAGCAAACTAAAAAAAAAAGAGTCTTTCACTCTTTCGAATTTCGATGGGGAATAACAGTTCCTCCGGGGCTAGCTACGATCTTTCAAAGCGCACGGTCATCTTCGGCCTCCATTGCTGTGCCCGAGGTATCGCACTTGGGTTGGGGTCACTGGTTCACTCTTCGGGTGCTCCAGCTCGCAACCGATATGTTCGCCTATGAAAATGTTATCGGAGAGGGAGGCTATGGCATCGTCTACCACGGGATTTTGCCCGATAATACTAATATTGCTGTCAAAAATTTGCTCAATAACCGTGGTCAAGCTGAGAGGGAATTTAAGGTGGAAGTTGAAGCAATTGGTCGGGTCCGCCATAAGAATTTGGTGAGACTTCTGGGATATTGTGCCGAAGGCGCTCATAGGATGCTTGTGTACGAGTATGTGGATAATGGAAACTTGGAGCAATGGCTTCATGGAGATGTTGGGCCTCATAGTCCTCTCACATGGGAGATCCGGATTGATATCATACTTGGAACTGCTAAAGGGTAAATACAGTATTCAATTTTAGGAAACTGAATTAGCTCTGATTTCTTATACTGATGCTATTTGGCTGATTTTATTTTTAGTGCAGCCTAATGTATTTGCATGAAGGATTAGAGCCAAAGGTAGTTCATCGAGATGTCAAATCAAGCAATATTATTCTTGATAAGCATTGGAACCCCAAGGTTTCGGATTTTGGCCTTGCCAAGCTTTTGGTGTCGGAGAGGAGCTGTGTTAGAACTCGTGTTATGGGAACATTTGGCTTGTTTTTTATTGTTTTTTCTCTACGAATTTTCTTAATAATTTTAGCACCTGATGAATGATAATATATTTTATATAGAAGCATCTGATCACATTCTCACATTTATCTCACCTTTCATCATATAATTTGAATGGCTCAGATTTAAAGTGGCCAAAAGATAAAATACTTTTTTATACTCTTAGATGTATAATAGAATTGTCTTCCAAAGCAGATTGAAGAACAAACATTTTGTCTTCCAATGCAGAGTTAACAGATTCAATAATTGATTACATACATTTATGATTTTATTATAACAGAACACATAATTTGGATAAAAATTTTAGATTTTAAAGTTAAGACCCTTTTAGGTCTACATCTGTGTCATTAAGTAATATGCAAAATTTGTATGAAACTGTTAAGAAAGCACAAATGGTTGTCCAAGTGGAAGCTGTCCGTGTTCAGAAAGAACTTGCTGCGTATGCGTTGCATATTTAGTTGTTAACTATCAAGTTTATCGCTCTTGGAATTATCAAAATGCATGCTGACTCATTTTATTCAATTATTTGTAGAGAAGAGTTTGATGGTTACTGTGAAGATGAGCTAATAAAGGTATGGCAATTTTCAGCATCTTTTTTTTTGCTTGAAAAATATTAAAACGTGGTAATTAAAAGCTAATTTTCTACTCAACATAGTTTTTAATTACAAGCGTTGCTCCACTGCTTCGTTGCGTTGCATTTCTCAACCAATACCTGCTCGACTGGAGTACCAATAATGTTGCATCTTTGGCCTGAGATTATTGAGGTGAGATTATTGAGGTGCTGTCCACCTTACTAAAATGGTCTGATGAAGTGCCTGCCTCATCACTCTGGTCATCTTGCATCGCCACTTTGACAAGGCATTACAGAACAGCCATATGTTTAAGGCAACTTTCGTTGTTATTTTTGGTCAAAGATGGTGGCCATATCTTCCTAAATCATTACAGAACAGTTAGCTGAGTTTGTCTCACTCACCATAAGCCAAATCATGAGTATTCATGGCATCCCATCCGTCATTCACCACTTCTTCCTCCATATTTTTTAATGCATTTTACAGTTTTTTGTATTCTTAGATTGGATGATTCATACCTTACTCTCATATCTTATAGTTCAGTTGATCTAAAATAGTTGATTTTGTGGTTTGCAGATTAAGCATGATATATCCAGTCTGCAACATGTTCAAGCTACTTTTATGTGCTGTTTGTCAAGTTGAGATGAAGCCTGGAGAGGGCATTTCGGTGCACACGGGCTCATCCAAGTCCACAAAATTTCGAACCTGGGATGGCCCGCTGCTCTGCTGCAGCTGCCAGGCTAAGAAAGAAGCTATGGAAGGAAGAAGACCATTGAATGATTTGTCTAGAATAAAAAATTGATGAACAAGTCTCCCATCAGCATTTGGCGTTCAATTTATTGATTAAAAGTTGCAATCAATTCTGAGGTCTGTAGTTCTGAGAGCGGAAATGCCTTCTGATACTCATTTGTAGCAGTTTGGGGATTTCGATAATAATGCAATTAAAAGAAGTTGGATGCCTGACTTTACGATTCTTCATTCTTTTTATGTGGAGCTAACCAGAAATATTTCTCCTCCGGATAAATAGAGAAGTGTCGTATAATATAATTCAATTCATTTGTCTTGCCTTATATATATGTACATGCAATTGTATAATTTCGGAGGGAGGATAGGCACATGGCACTGCATTCTTAGAATTTCTGCTCAGAAAATGGAAGTGCAAAACTACTCGGTTTTTAACCTGATCCAAATGTAAAGCTGCTTTTGTTGTGCTATCTTATTAGCAGTGCTATATAGCGCCGATTATCGTTTGAATACTTGCATCTGTTTTAAGTTCATTTCATGTTAATTTGACCTTTGTTTCGTGTGGTTCTAGAATGTTCAGATTTATAAAAAAGATTAAATGTTCAGATTTATGGATTGAATGTGATGTAGCTCAAATGGTAGAGCACTCGTATGGTATACGA

Network for GWHGAAEX009098

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	269	324	4.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.340
SRP064423	SRR2545915	Juvenile tuber	3.690
SRP108465	SRR5643513	five period of Gastrodia elata	4.670
	SRR5643514	five period of Gastrodia elata	3.920
	SRR5643515	five period of Gastrodia elata	4.050
	SRR5643524	five period of Gastrodia elata	3.760
	SRR5643525	five period of Gastrodia elata	5.240
	SRR5643528	five period of Gastrodia elata	3.520
	SRR5643658	five period of Gastrodia elata	5.090
	SRR5643659	five period of Gastrodia elata	4.130
	SRR5643660	five period of Gastrodia elata	4.690
	SRR5643661	five period of Gastrodia elata	4.420
	SRR5643662	five period of Gastrodia elata	5.380
	SRR5643663	five period of Gastrodia elata	4.780
	SRR5643664	five period of Gastrodia elata	5.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.450
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.780
SRP279888	Gastro	Gastrodia elata tuber	3.56
	Juven	Juvenile tuber	3.52
	Mother_Gastro	Mother tuber of Gastrodia elata	3.56
	Mother_Juven	Mother tuber of Juvenile	3.35