Detail information of GWHGAAEX009100/evm.TU.scaffold_235.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743812478|ref|XP_010929423.1|0PREDICTED: glucan endo-1,3-beta-glucosidase 6-like [Elaeis guineensis]
Swissprottr|Q93Z08|E136_ARATH0Glucan endo-1,3-beta-glucosidase 6 (Precursor)
trEMBLtr|M0SMI2|M0SMI2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P09650_001}
TAIRAT5G580900O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000024535016951+
Transcript Sequence

Network for GWHGAAEX009100

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00332.17Glyco_hydro_17383554.00E-71
PF07983.12X83754462.20E-14
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH17

KEGG pathway

KO Enzyme pathway mapID
K19893GN5_6 Metabolic pathways map01100
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.760
SRR2545915Juvenile tuber27.910
SRP108465SRR5643513five period of Gastrodia elata17.030
SRR5643514five period of Gastrodia elata18.090
SRR5643515five period of Gastrodia elata17.880
SRR5643524five period of Gastrodia elata15.400
SRR5643525five period of Gastrodia elata68.940
SRR5643528five period of Gastrodia elata45.060
SRR5643658five period of Gastrodia elata63.480
SRR5643659five period of Gastrodia elata13.590
SRR5643660five period of Gastrodia elata11.710
SRR5643661five period of Gastrodia elata13.700
SRR5643662five period of Gastrodia elata12.780
SRR5643663five period of Gastrodia elata12.780
SRR5643664five period of Gastrodia elata10.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.240
SRR6049655Rhizomagastrodiae_C368-T10_good_114.800
SRR6049656Rhizomagastrodiae_C368-T07_good_117.210
SRR6049657Rhizomagastrodiae_C368-T07_good_116.900
SRR6049658Rhizomagastrodiae_C368-T04_good_115.680
SRR6049659Rhizomagastrodiae_C368-T04_good_115.980
SRR6049660Rhizomagastrodiae_C368-T01_good_116.330
SRR6049661Rhizomagastrodiae_C368-T04_good_118.790
SRR6049662Rhizomagastrodiae_C368-T01_good_122.480
SRR6049663Rhizomagastrodiae_C368-T01_good_116.650
SRR6049664Rhizomagastrodiae_C368-T10_good_117.180
SRR6049665Rhizomagastrodiae_C368-T10_good_117.180
SRP279888GastroGastrodia elata tuber 11.75
JuvenJuvenile tuber9.98
Mother_GastroMother tuber of Gastrodia elata 17.05
Mother_JuvenMother tuber of Juvenile 6.48