Detail information of GWHGAAEX009102/evm.TU.scaffold_235.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557694902|ref|YP_008797956.1| | 9.00E-08 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| KOG | KOG0424 | 1.00E-74 | Ubiquitin-protein ligase |
| nr | gi|573923440|ref|XP_006649299.1| | 5.34E-77 | PREDICTED: SUMO-conjugating enzyme SCE1-like [Oryza brachyantha] |
| Swissprot | tr|Q42551|SCE1_ARATH | 4.00E-75 | SUMO-conjugating enzyme SCE1 |
| trEMBL | tr|J3LJF1|J3LJF1_ORYBR | 2.00E-77 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G11770.1} |
| TAIR | AT3G57870 | 1.00E-74 | sumo conjugation enzyme 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000245 | 60266 | 100653 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009102
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00179.25 | UQ_con | 9 | 149 | 3.60E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10577 | UBE2I, UBC9 | RNA transport | map03013 |
| Ubiquitin mediated proteolysis | map04120 | ||
| NF-kappa B signaling pathway | map04064 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.720 |
| SRR2545915 | Juvenile tuber | 2.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.770 |
| SRR5643514 | five period of Gastrodia elata | 5.510 | |
| SRR5643515 | five period of Gastrodia elata | 3.970 | |
| SRR5643524 | five period of Gastrodia elata | 4.600 | |
| SRR5643525 | five period of Gastrodia elata | 2.050 | |
| SRR5643528 | five period of Gastrodia elata | 7.950 | |
| SRR5643658 | five period of Gastrodia elata | 2.360 | |
| SRR5643659 | five period of Gastrodia elata | 2.890 | |
| SRR5643660 | five period of Gastrodia elata | 2.120 | |
| SRR5643661 | five period of Gastrodia elata | 3.270 | |
| SRR5643662 | five period of Gastrodia elata | 1.030 | |
| SRR5643663 | five period of Gastrodia elata | 2.360 | |
| SRR5643664 | five period of Gastrodia elata | 1.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.65 |
| Juven | Juvenile tuber | 3.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.52 | |
| Mother_Juven | Mother tuber of Juvenile | 2.87 |