Detail information of GWHGAAEX009103/evm.TU.scaffold_235.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG04244.00E-105Ubiquitin-protein ligase
nrgi|573923440|ref|XP_006649299.1|2.63E-110PREDICTED: SUMO-conjugating enzyme SCE1-like [Oryza brachyantha]
Swissprottr|Q42551|SCE1_ARATH1.00E-105SUMO-conjugating enzyme SCE1
trEMBLtr|J3LJF1|J3LJF1_ORYBR1.00E-110Uncharacterized protein {ECO:0000313|EnsemblPlants:OB03G11770.1}
TAIRAT3G578704.00E-105sumo conjugation enzyme 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000245184810213508-
Transcript Sequence

Network for GWHGAAEX009103

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con91511.10E-44
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10577UBE2I, UBC9 RNA transport map03013
Ubiquitin mediated proteolysismap04120
NF-kappa B signaling pathwaymap04064

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.270
SRR2545915Juvenile tuber11.460
SRP108465SRR5643513five period of Gastrodia elata15.880
SRR5643514five period of Gastrodia elata20.330
SRR5643515five period of Gastrodia elata18.370
SRR5643524five period of Gastrodia elata18.230
SRR5643525five period of Gastrodia elata171.390
SRR5643528five period of Gastrodia elata127.420
SRR5643658five period of Gastrodia elata137.310
SRR5643659five period of Gastrodia elata12.590
SRR5643660five period of Gastrodia elata10.180
SRR5643661five period of Gastrodia elata11.930
SRR5643662five period of Gastrodia elata17.110
SRR5643663five period of Gastrodia elata14.350
SRR5643664five period of Gastrodia elata14.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.260
SRR6049655Rhizomagastrodiae_C368-T10_good_129.790
SRR6049656Rhizomagastrodiae_C368-T07_good_115.710
SRR6049657Rhizomagastrodiae_C368-T07_good_118.340
SRR6049658Rhizomagastrodiae_C368-T04_good_118.710
SRR6049659Rhizomagastrodiae_C368-T04_good_119.870
SRR6049660Rhizomagastrodiae_C368-T01_good_117.320
SRR6049661Rhizomagastrodiae_C368-T04_good_116.690
SRR6049662Rhizomagastrodiae_C368-T01_good_116.950
SRR6049663Rhizomagastrodiae_C368-T01_good_115.990
SRR6049664Rhizomagastrodiae_C368-T10_good_122.310
SRR6049665Rhizomagastrodiae_C368-T10_good_122.310
SRP279888GastroGastrodia elata tuber 20.30
JuvenJuvenile tuber21.42
Mother_GastroMother tuber of Gastrodia elata 32.91
Mother_JuvenMother tuber of Juvenile 23.93