Detail information of GWHGAAEX009106/evm.TU.scaffold_235.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|9.00E-16ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04163.00E-98Ubiquitin-protein ligase
nrgi|672140905|ref|XP_008794268.1|1.32E-111PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Phoenix dactylifera]
Swissprottr|P42749|UBC5_ARATH1.00E-104Ubiquitin-conjugating enzyme E2 5
trEMBLtr|M0SY50|M0SY50_MUSAM3.00E-111Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P13210_001}
TAIRAT5G413403.00E-98ubiquitin conjugating enzyme 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000245274926282445-
Transcript Sequence

Network for GWHGAAEX009106

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con101426.70E-37
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10576UBE2H, UBC8 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms104.700
SRR2545915Juvenile tuber78.740
SRP108465SRR5643513five period of Gastrodia elata67.480
SRR5643514five period of Gastrodia elata84.250
SRR5643515five period of Gastrodia elata67.210
SRR5643524five period of Gastrodia elata87.030
SRR5643525five period of Gastrodia elata157.930
SRR5643528five period of Gastrodia elata176.950
SRR5643658five period of Gastrodia elata199.680
SRR5643659five period of Gastrodia elata27.420
SRR5643660five period of Gastrodia elata26.670
SRR5643661five period of Gastrodia elata30.290
SRR5643662five period of Gastrodia elata30.440
SRR5643663five period of Gastrodia elata26.870
SRR5643664five period of Gastrodia elata30.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_146.240
SRR6049655Rhizomagastrodiae_C368-T10_good_198.270
SRR6049656Rhizomagastrodiae_C368-T07_good_154.990
SRR6049657Rhizomagastrodiae_C368-T07_good_151.500
SRR6049658Rhizomagastrodiae_C368-T04_good_156.800
SRR6049659Rhizomagastrodiae_C368-T04_good_160.080
SRR6049660Rhizomagastrodiae_C368-T01_good_149.870
SRR6049661Rhizomagastrodiae_C368-T04_good_154.810
SRR6049662Rhizomagastrodiae_C368-T01_good_146.320
SRR6049663Rhizomagastrodiae_C368-T01_good_145.300
SRR6049664Rhizomagastrodiae_C368-T10_good_164.640
SRR6049665Rhizomagastrodiae_C368-T10_good_164.640
SRP279888GastroGastrodia elata tuber 43.88
JuvenJuvenile tuber107.52
Mother_GastroMother tuber of Gastrodia elata 119.73
Mother_JuvenMother tuber of Juvenile 82.96