Detail information of GWHGAAEX009109/evm.TU.scaffold_235.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|226314841|ref|YP_002774737.1|5.00E-56ATP-dependent Clp protease proteolytic subunit [Brevibacillus brevis NBRC 100599]
KOGKOG08408.00E-132ATP-dependent Clp protease, proteolytic subunit
nrgi|672133451|ref|XP_008790347.1|1.98E-140PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic [Phoenix dactylifera]
Swissprottr|Q9SAA2|CLPP6_ARATH2.00E-132ATP-dependent Clp protease proteolytic subunit 6, chloroplastic (Precursor)
trEMBLtr|B9RZA8|B9RZA8_RICCO8.00E-138ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}
TAIRAT1G117508.00E-132CLP protease proteolytic subunit 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000245368887405826+
Transcript Sequence

Network for GWHGAAEX009109

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00574.22CLP_protease902636.30E-65
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01358clpP, CLPP Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0004252Molecular Functionserine-type endopeptidase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms68.870
SRR2545915Juvenile tuber71.240
SRP108465SRR5643513five period of Gastrodia elata30.280
SRR5643514five period of Gastrodia elata30.980
SRR5643515five period of Gastrodia elata32.180
SRR5643524five period of Gastrodia elata30.400
SRR5643525five period of Gastrodia elata23.770
SRR5643528five period of Gastrodia elata18.870
SRR5643658five period of Gastrodia elata21.070
SRR5643659five period of Gastrodia elata35.700
SRR5643660five period of Gastrodia elata43.810
SRR5643661five period of Gastrodia elata37.380
SRR5643662five period of Gastrodia elata63.440
SRR5643663five period of Gastrodia elata54.730
SRR5643664five period of Gastrodia elata64.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_151.380
SRR6049655Rhizomagastrodiae_C368-T10_good_128.430
SRR6049656Rhizomagastrodiae_C368-T07_good_140.810
SRR6049657Rhizomagastrodiae_C368-T07_good_159.070
SRR6049658Rhizomagastrodiae_C368-T04_good_172.230
SRR6049659Rhizomagastrodiae_C368-T04_good_179.010
SRR6049660Rhizomagastrodiae_C368-T01_good_154.550
SRR6049661Rhizomagastrodiae_C368-T04_good_158.540
SRR6049662Rhizomagastrodiae_C368-T01_good_133.890
SRR6049663Rhizomagastrodiae_C368-T01_good_145.370
SRR6049664Rhizomagastrodiae_C368-T10_good_130.830
SRR6049665Rhizomagastrodiae_C368-T10_good_130.830
SRP279888GastroGastrodia elata tuber 76.51
JuvenJuvenile tuber57.00
Mother_GastroMother tuber of Gastrodia elata 27.30
Mother_JuvenMother tuber of Juvenile 32.81