Detail information of GWHGAAEX009111/evm.TU.scaffold_235.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284167609|ref|YP_003405887.1| | 4.00E-41 | sugar transporter [Haloterrigena turkmenica DSM 5511] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|672201374|ref|XP_008778122.1| | 0 | PREDICTED: monosaccharide-sensing protein 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q8LPQ8|MSSP2_ARATH | 0 | Monosaccharide-sensing protein 2 |
| trEMBL | tr|M0SYW6|M0SYW6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P15870_001} |
| TAIR | AT4G35300 | 0 | tonoplast monosaccharide transporter2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000245 | 474610 | 492850 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009111
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 8 | 224 | 3.50E-52 |
| PF00083.23 | Sugar_tr | 514 | 736 | 2.80E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.410 |
| SRR2545915 | Juvenile tuber | 48.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 57.980 |
| SRR5643514 | five period of Gastrodia elata | 55.320 | |
| SRR5643515 | five period of Gastrodia elata | 57.540 | |
| SRR5643524 | five period of Gastrodia elata | 62.010 | |
| SRR5643525 | five period of Gastrodia elata | 70.510 | |
| SRR5643528 | five period of Gastrodia elata | 66.400 | |
| SRR5643658 | five period of Gastrodia elata | 71.180 | |
| SRR5643659 | five period of Gastrodia elata | 66.310 | |
| SRR5643660 | five period of Gastrodia elata | 67.830 | |
| SRR5643661 | five period of Gastrodia elata | 68.540 | |
| SRR5643662 | five period of Gastrodia elata | 56.350 | |
| SRR5643663 | five period of Gastrodia elata | 60.060 | |
| SRR5643664 | five period of Gastrodia elata | 51.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 46.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 61.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.57 |
| Juven | Juvenile tuber | 44.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.42 | |
| Mother_Juven | Mother tuber of Juvenile | 27.43 |