Detail information of GWHGAAEX009113/evm.TU.scaffold_235.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|407463389|ref|YP_006774706.1|1.00E-14DNA polymerase II small subunit [Candidatus Nitrosopumilus koreensis AR1]
KOGKOG27320DNA polymerase delta, regulatory subunit 55
nrgi|743825284|ref|XP_010932996.1|0PREDICTED: DNA polymerase delta small subunit [Elaeis guineensis]
Swissprottr|Q9LRE5|DPOD2_ORYSJ0DNA polymerase delta small subunit
trEMBLtr|M0RUG7|M0RUG7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P22370_001}
TAIRAT2G421200DNA polymerase delta small subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000245558272601991+
Transcript Sequence

Network for GWHGAAEX009113

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04042.15DNA_pol_E_B1914002.70E-42
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02328POLD2 DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440

Gene Ontology

GO term OntologyName
GO:0006260Biological ProcessDNA replication
GO:0003677Molecular FunctionDNA binding
GO:0003887Molecular FunctionDNA-directed DNA polymerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.530
SRR2545915Juvenile tuber11.100
SRP108465SRR5643513five period of Gastrodia elata12.660
SRR5643514five period of Gastrodia elata11.810
SRR5643515five period of Gastrodia elata9.870
SRR5643524five period of Gastrodia elata11.520
SRR5643525five period of Gastrodia elata5.180
SRR5643528five period of Gastrodia elata5.370
SRR5643658five period of Gastrodia elata4.340
SRR5643659five period of Gastrodia elata12.530
SRR5643660five period of Gastrodia elata16.710
SRR5643661five period of Gastrodia elata15.590
SRR5643662five period of Gastrodia elata11.650
SRR5643663five period of Gastrodia elata10.710
SRR5643664five period of Gastrodia elata10.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.630
SRR6049655Rhizomagastrodiae_C368-T10_good_117.150
SRR6049656Rhizomagastrodiae_C368-T07_good_111.940
SRR6049657Rhizomagastrodiae_C368-T07_good_19.580
SRR6049658Rhizomagastrodiae_C368-T04_good_19.670
SRR6049659Rhizomagastrodiae_C368-T04_good_110.290
SRR6049660Rhizomagastrodiae_C368-T01_good_111.890
SRR6049661Rhizomagastrodiae_C368-T04_good_19.120
SRR6049662Rhizomagastrodiae_C368-T01_good_112.150
SRR6049663Rhizomagastrodiae_C368-T01_good_113.340
SRR6049664Rhizomagastrodiae_C368-T10_good_114.240
SRR6049665Rhizomagastrodiae_C368-T10_good_114.240
SRP279888GastroGastrodia elata tuber 17.15
JuvenJuvenile tuber18.31
Mother_GastroMother tuber of Gastrodia elata 10.18
Mother_JuvenMother tuber of Juvenile 14.71