Detail information of GWHGAAEX009116/evm.TU.scaffold_235.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695027306|ref|XP_009400991.1|2.91E-66PREDICTED: protein SCAF8-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FHH8|COL5_ARATH3.00E-09Zinc finger protein CONSTANS-LIKE 5
trEMBLtr|M0SSB9|M0SSB9_MUSAM2.00E-67Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P26570_001}
TAIRAT2G333506.00E-44CCT motif family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000245778547781825+
Transcript Sequence

Network for GWHGAAEX009116

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06203.13CCT2522943.40E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.490
SRR2545915Juvenile tuber1.180
SRP108465SRR5643513five period of Gastrodia elata1.730
SRR5643514five period of Gastrodia elata1.010
SRR5643515five period of Gastrodia elata0.660
SRR5643524five period of Gastrodia elata0.690
SRR5643525five period of Gastrodia elata20.920
SRR5643528five period of Gastrodia elata16.390
SRR5643658five period of Gastrodia elata18.680
SRR5643659five period of Gastrodia elata3.460
SRR5643660five period of Gastrodia elata3.080
SRR5643661five period of Gastrodia elata2.440
SRR5643662five period of Gastrodia elata2.000
SRR5643663five period of Gastrodia elata2.450
SRR5643664five period of Gastrodia elata2.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.400
SRR6049655Rhizomagastrodiae_C368-T10_good_12.630
SRR6049656Rhizomagastrodiae_C368-T07_good_12.720
SRR6049657Rhizomagastrodiae_C368-T07_good_14.300
SRR6049658Rhizomagastrodiae_C368-T04_good_16.720
SRR6049659Rhizomagastrodiae_C368-T04_good_15.690
SRR6049660Rhizomagastrodiae_C368-T01_good_13.870
SRR6049661Rhizomagastrodiae_C368-T04_good_14.700
SRR6049662Rhizomagastrodiae_C368-T01_good_16.790
SRR6049663Rhizomagastrodiae_C368-T01_good_15.190
SRR6049664Rhizomagastrodiae_C368-T10_good_15.990
SRR6049665Rhizomagastrodiae_C368-T10_good_15.990
SRP279888GastroGastrodia elata tuber 3.51
JuvenJuvenile tuber1.40
Mother_GastroMother tuber of Gastrodia elata 7.18
Mother_JuvenMother tuber of Juvenile 2.22