Detail information of GWHGAAEX009120/evm.TU.scaffold_235.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284166917|ref|YP_003405196.1| | 1.00E-81 | sugar transporter [Haloterrigena turkmenica DSM 5511] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|743829815|ref|XP_010934248.1| | 0 | PREDICTED: probable inositol transporter 2 [Elaeis guineensis] |
| Swissprot | tr|Q9C757|INT2_ARATH | 0 | Probable inositol transporter 2 |
| trEMBL | tr|A0A059Q2S7|A0A059Q2S7_9POAL | 0 | Uncharacterized protein {ECO:0000313|EMBL:AGT16356.1} |
| TAIR | AT1G30220 | 0 | inositol transporter 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000245 | 867955 | 877505 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009120
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 30 | 371 | 5.30E-91 |
| PF00083.23 | Sugar_tr | 453 | 556 | 5.30E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.980 |
| SRR2545915 | Juvenile tuber | 23.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.030 |
| SRR5643514 | five period of Gastrodia elata | 24.220 | |
| SRR5643515 | five period of Gastrodia elata | 18.880 | |
| SRR5643524 | five period of Gastrodia elata | 20.710 | |
| SRR5643525 | five period of Gastrodia elata | 42.510 | |
| SRR5643528 | five period of Gastrodia elata | 32.050 | |
| SRR5643658 | five period of Gastrodia elata | 38.120 | |
| SRR5643659 | five period of Gastrodia elata | 26.360 | |
| SRR5643660 | five period of Gastrodia elata | 36.050 | |
| SRR5643661 | five period of Gastrodia elata | 30.220 | |
| SRR5643662 | five period of Gastrodia elata | 44.070 | |
| SRR5643663 | five period of Gastrodia elata | 42.240 | |
| SRR5643664 | five period of Gastrodia elata | 63.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 47.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.92 |
| Juven | Juvenile tuber | 31.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.86 | |
| Mother_Juven | Mother tuber of Juvenile | 20.95 |