Gene detail

Detail information of GWHGAAEX009123/evm.TU.scaffold_236.6

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672178006\|ref\|XP_008809119.1\|	3.30E-22	PREDICTED: zinc finger CCCH domain-containing protein 55-like [Phoenix dactylifera]
Swissprot	tr\|Q6YYC0\|C3H55_ORYSJ	5.00E-20	Zinc finger CCCH domain-containing protein 55
trEMBL	tr\|A0A061DRA2\|A0A061DRA2_THECC	5.00E-20	Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 2 {ECO:0000313\|EMBL:EOX92488.1}
TAIR	AT3G18640	1.00E-16	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000232	268750	292574	-

Transcript Sequence
>GWHTAAEX009123 ATGGAGCTCACGAGGGAGCAAGGCGGCGGCAACGGGACATCGTGGCTTCTGTTTTGCGGCCTACGAGGTGTGGAGGCGGAGAAAATGAAGATTTTTGGGTTCTGTAAGAGGTTTCTCATATTTCGATCTTTGAAGCTCCATATTTTCCTCCTACATCATAATTTTTTGGGCTCTGGTGATTCTCACTACAGGGCATTAAAAATGCTCACCTGGTTTTTTATTTTCATATTAAAATGTTTTGCGGTTGTGCTGCTCCCTGATCCTATTGCTCGTTCCTCGGTTGAAGGGGATGAGTCTTCTGGGGCTGATCTCGTGGCTCTTAGTGATATTTGGTGGAGGGATTATTTGTTTCTGTTGCAGTCCCATGCTATGCTTGTGCAACCCCTTGCGAGGCCTCAAGCGCCGATCAGAGTCCCGCCCGTTCCATTTCCATTTCCTGAGAACAGCAAAAGTGTTCAACATGAAGTTAGCATATTCTTAGAGAGATGCGGCCTTCCAATTACTGGGGAGACTGCTGTATGGCCCAAATGGGAAATAGCTGGCAATCAGACTTGTGAAGACAAACGAGATTGCAGTGAGGCTGAAGAGGGAAATGAAAAGCTGGTGAACAAAAGCAGTTGGAGTCCTGTGGAGGGCATTGCAAAACAAGAAGCTGGTGGATGGCCTGGAACTACATCTAAGACAATTGGGCAGTGGAACAACGGTCAAAACAGAAACAGATGTCAGAATCAATACAGGGGATGGACTGCCGCATCAAAAGATGGCCCTATAATGGCAAGCAAACACGGAAATAATGCATTTGTTGATGGAATTGAAAAGTGGGAAGCTGCTGAAGGCAGCAGTTCCCGCAATCATGATGGTAGTGATAGATGGTGGCAATCCCGTTCTAGCAGTCAAATGGTGGTCAAAGACAGTTTTAGCAAGTCTACTCATAGGGATCAATCGAAATATGATAATGTTAAGAGGCAAAATGATGAGTGGCCTAAGTTGCCTGGAGATACACCGGAAGGCATTGTCTTGGATCATATCGGTCGAGATTGTTGGAGGCAATCTGGCTCTAATGTTCAGATGGTGAATAAAGATGACAATGTGAGGAATAATAATTATTTGGCTAGATGTACTAAAGCCCCAGCTGAAGCTGGGGATGCTTTTGATCAGCAAGATCGTGACAAATTGAGGCAACCTCTCTCCAACATTCAAATTGTAAGCAAAGAAAGTTTGAACAGTTCTGCAATTTGGGATCAAGCAGCGGATAATAATGTGAAGAAAGAGACTGATGGATGGCCTAAATGGCCTGTTGCCCCATCTAAAGGCGAAAATTCCTTTGATCATGATGGTCATGATAGAGGGAGACAATTAAGCTCCAACATTCAAACTGTAAACAAAGGTAATTTAAAAAATTCTGCAGATTGGAATAGAGCAACAGATGATAATGTGAAGAGAAACAGATTTCAGAATCAATACAAGGGATGGACTGCCGCATCAAAAGATGGCCCTATAATGGCAAGCAAACACGGAAATAATGCATTTGTTGATGGAATTGAAAAGTGGGAAGCTGCTGAAGGCAGCAGTTCCCGCAATCATGATGGTAGTGATAGATGGTGGCAATCCCGTTCTAGCAGTCAAATGGTGGTCAAAGACAGTTTTAGCAAGTCTACTCATAGGGATCAATCGAAATATGATAATGTTAAGAGGCAAAATGATGAGTGGCCTAAGTTGCCTGGAGATACACCGGAAGGCATTGTCTTGGATCATATCGGTCGAGATTGTTGGAGGCAATCTGGCTCTAATGTTCAGATGGTGAATAAAGATGACAATGTGAGGAATAATAATTATTTGGCTAGATGTACTAAAGCCCCAGCTGAAGCTGGGGATGCTTTTGATCAGCAAGATCGTGACAAATTGAGGCAACCTCTCTCCAACATTCAAATTGTAAGCAAAGAAAGTTTGAACAGTTCTGCAATTTGGGATCAAGCAGCGGATAATAATGTGAAGAAAGAGACTGATGGATGGTCTAAATGGCCTGTTGCCCCATCTAAAGGTGAAAATTCCTTTGATCATGATGGTCATGATAGAGGGAGACAATTAAGCTCCAACATTCAAATTGTAAACAAAGGTAATTTAAAAAATTCTGCAGATTGGAATAGAGCAACAGATGATAATGTGAAGAGAAAAAATAATGAATGGCTTAAATGGCCAAAAATGCCTTCTAATGATGAGGATTCCTTTGTTCATGATGATCGTGACAGTTGTATGCAGTTATGCTCCAACATTCAAAACATAAACAAAGGAGGTAATAGAAGCAATTTTGTAGGCTGGGATAAAGCAACAAATGATAATGTGAAGAGAGAGAATGATGGGTTGCCTAATTGGTCTAAAGCCCCATCTAAAGATGGGGATTCTTTCGATCATGATGGCAGTGATAGATGGAGGCAATTGAGCTCGAACATTCGAAACACGAACGAAGGCAATTTGTGCAATTTTGCAGGCTCGAATAGAGAAACAGATGATAATGTGAAGAAAAAGAATGATGGGTGGCCAAAGACAACGGAACAATTTCCCAGTAGCGGAAACAAAAAAGATGATTTGCAATCCCATAGATTGACCAAATCGTTAGATGATGATGACTGGCAGAAGGAAAATGCCAGCAAGAATCCAGATCTTGGTCAAAATGATGATCCATGGATGCCGCAGAGTGTTGTGCCAAAATGTAATTGGAATAAATCAGTAAGCTGGACTGAATCCACCGGTGAAATTAATCAGAAACATTGGGGATCTGGTTTAGCTCAAACTGGTAGTGATCCATGGAAGCAGGTTAATCCTACTGTTTCACCCAAAGCTGGTGGGAGGAAATTGGTAAATGGCGCTCCTGCAGTTGCTCAAGCTGAAAGCTCTGATAGAAAGAAAAACAAATGGAGCGGTACTCCTGATTTTAAGCAGAACAGATGGAATAGAGCCATTTCTTCTAGCTCAATTAAGCGTAGTCCCAGAAGCAAAAATAGAAAAGGCCGCTGGATCCAATTCCTTGAAAGATTTATATCTGAAGATGATGATGATTCCCCAAGATGTTTTGATGCAAGCCCTGCAAATTCATCGAAATATGATCAAAACACACCTACAGTTTGGACCAAGTCTGGCAGTGATAGTTTTGATACAAATCCTATGAAATGGGATTCAAACTTGGCTCATATGGGCTGCAATCCTAGGAAACGTCTTAGCTCCTGTGAAGTATCTAAATTTGGCAGGGCCCTCAAATCATCACAATCCTGTAGGAGGCATTTCAGGGGTAGAAGCACAACTCGTTTCCATGCCTTGGAGCATGGACATATTCAATCGAAGGACATTTATGAAAAGGTTTCTAGTAGGGTTTCTGATCAGTACAGAGATTCCACATCACAAAGAAGCCATCAAGTAAGCAAGAAAACTCGATGCTTGGAATCTGACAAATGGATAAATTTCAATGATCCTGGGAATCAAAGGGATCATTTACAAGATATAGATAACTATGGATTTCAAAATAGCAATGTTGGATTTCGCAGGGAGAGCTGCGGCCATGATACTTCTTTCAATGAGTCCAAGGAAATGTTCCATGGTAGAAAAGATGCTGCTCCATGTTTTAACAGGAGGGTAGATTTATGCAGTGGTGATGATGTTATTGGTAAGGACTTCAGCGAACTTGATGAGCAATTTTCTGGAATGTCTCATTCCATCAATCGGTTCATGTTTCAAGGCGTGAATCATGGTGATAAATTAAATCATGAGAATTTTGTCAATGTGTTGTCATCAATTAATCAAGAGCTTTGTAAAACTTTTATAAGAGACTCAAATGGTCAGCCTCAAATTGTGAAAGATGATGAAGGCTTTAGAGATGGCACTATCAAATCCATGATTACATGCCCTACGCATAATGTAGACCAAGTTGTAGCAGATTCTCCTCATGATTTAAAGAGTCATCAAAAGCAATATGTTTGCTCTCAACTTCTTTCCATAACTGAAAACTCCAATTCAAGTGCTCAAAGGAAGCAGAATGATGAGCAGCAGGCTAATAAAGAAGGCACTTTGTCCAGCAGTTCCCTAAACAGGACTTCACTTAAAAAACAAGAGGCTGATAAGCAGATCGACAAAAAACAGGAGAGCAACAGCAGCAATTGTGAGAAAGATGCCAGAGCTGATGGGAAGGTTAAAGGTATCATATATGAAAAAGGCCTTTTTTTGTTTAAAACTGAACTAGCAGAATTTGTTAAGGAGAAACTAACGCCTCATTGGAAAGAAGGCCGCTTGAGTAAAGAAGCTTTTAAGAATGTGGTGAAGAGAGTGGTAGACAAAGTTGTTTGTGTTCAGGGCTCTAATTTTCCTCGAACTAAAGAAAGGATTGATGTATACATGTCTTCCTCAGAGTCCAAGCTACGCAAACTTGTGCAGGATTATCTTGAAATGTTTATAAATACATAAAGTGCTGCTTTGGAGCTGTGCTTTTTATTACTTGACTCGGCCAACATGGCTTAAATTTTTGGTTTTTTGAATTATGGTTAGAAAATTTTGCATTGAATATACAGTTAGATGCTTCCTTCTCTGTTTAAGCGTTTTTTAAGCTTTTTAGGCTATGAGTATTTTTAAGATTGAGGAAACCCTATTTTTGTTCACTGGGCCTTGCTAAGCACTAAAAAGAAATCAGAGCTTTTTAGCTTTAAGCGCATTGGGG

Network for GWHGAAEX009123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX009123
MELTREQGGGNGTSWLLFCGLRGVEAEKMKIFGFCKRFLIFRSLKLHIFLLHHNFLGSGDSHYRALKMLTWFFIFILKCFAVVLLPDPIARSSVEGDESSGADLVALSDIWWRDYLFLLQSHAMLVQPLARPQAPIRVPPVPFPFPENSKSVQHEVSIFLERCGLPITGETAVWPKWEIAGNQTCEDKRDCSEAEEGNEKLVNKSSWSPVEGIAKQEAGGWPGTTSKTIGQWNNGQNRNRCQNQYRGWTAASKDGPIMASKHGNNAFVDGIEKWEAAEGSSSRNHDGSDRWWQSRSSSQMVVKDSFSKSTHRDQSKYDNVKRQNDEWPKLPGDTPEGIVLDHIGRDCWRQSGSNVQMVNKDDNVRNNNYLARCTKAPAEAGDAFDQQDRDKLRQPLSNIQIVSKESLNSSAIWDQAADNNVKKETDGWPKWPVAPSKGENSFDHDGHDRGRQLSSNIQTVNKGNLKNSADWNRATDDNVKRNRFQNQYKGWTAASKDGPIMASKHGNNAFVDGIEKWEAAEGSSSRNHDGSDRWWQSRSSSQMVVKDSFSKSTHRDQSKYDNVKRQNDEWPKLPGDTPEGIVLDHIGRDCWRQSGSNVQMVNKDDNVRNNNYLARCTKAPAEAGDAFDQQDRDKLRQPLSNIQIVSKESLNSSAIWDQAADNNVKKETDGWSKWPVAPSKGENSFDHDGHDRGRQLSSNIQIVNKGNLKNSADWNRATDDNVKRKNNEWLKWPKMPSNDEDSFVHDDRDSCMQLCSNIQNINKGGNRSNFVGWDKATNDNVKRENDGLPNWSKAPSKDGDSFDHDGSDRWRQLSSNIRNTNEGNLCNFAGSNRETDDNVKKKNDGWPKTTEQFPSSGNKKDDLQSHRLTKSLDDDDWQKENASKNPDLGQNDDPWMPQSVVPKCNWNKSVSWTESTGEINQKHWGSGLAQTGSDPWKQVNPTVSPKAGGRKLVNGAPAVAQAESSDRKKNKWSGTPDFKQNRWNRAISSSSIKRSPRSKNRKGRWIQFLERFISEDDDDSPRCFDASPANSSKYDQNTPTVWTKSGSDSFDTNPMKWDSNLAHMGCNPRKRLSSCEVSKFGRALKSSQSCRRHFRGRSTTRFHALEHGHIQSKDIYEKVSSRVSDQYRDSTSQRSHQVSKKTRCLESDKWINFNDPGNQRDHLQDIDNYGFQNSNVGFRRESCGHDTSFNESKEMFHGRKDAAPCFNRRVDLCSGDDVIGKDFSELDEQFSGMSHSINRFMFQGVNHGDKLNHENFVNVLSSINQELCKTFIRDSNGQPQIVKDDEGFRDGTIKSMITCPTHNVDQVVADSPHDLKSHQKQYVCSQLLSITENSNSSAQRKQNDEQQANKEGTLSSSSLNRTSLKKQEADKQIDKKQESNSSNCEKDARADGKVKGIIYEKGLFLFKTELAEFVKEKLTPHWKEGRLSKEAFKNVVKRVVDKVVCVQGSNFPRTKERIDVYMSSSESKLRKLVQDYLEMFINT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.150
SRP064423	SRR2545915	Juvenile tuber	0.550
SRP108465	SRR5643513	five period of Gastrodia elata	0.910
	SRR5643514	five period of Gastrodia elata	1.050
	SRR5643515	five period of Gastrodia elata	0.770
	SRR5643524	five period of Gastrodia elata	0.980
	SRR5643525	five period of Gastrodia elata	0.440
	SRR5643528	five period of Gastrodia elata	0.500
	SRR5643658	five period of Gastrodia elata	0.400
	SRR5643659	five period of Gastrodia elata	0.830
	SRR5643660	five period of Gastrodia elata	0.500
	SRR5643661	five period of Gastrodia elata	0.310
	SRR5643662	five period of Gastrodia elata	0.530
	SRR5643663	five period of Gastrodia elata	0.480
	SRR5643664	five period of Gastrodia elata	0.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.940
SRP279888	Gastro	Gastrodia elata tuber	0.32
	Juven	Juvenile tuber	1.31
	Mother_Gastro	Mother tuber of Gastrodia elata	0.57
	Mother_Juven	Mother tuber of Juvenile	1.20