Gene detail

Detail information of GWHGAAEX009124/evm.TU.scaffold_236.13

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2359	2.00E-147	Uncharacterized conserved protein
nr	gi\|672184242\|ref\|XP_008812428.1\|	0	PREDICTED: condensin-2 complex subunit H2 [Phoenix dactylifera]
Swissprot	tr\|Q9LUR0\|CNDH2_ARATH	7.00E-152	Condensin-2 complex subunit H2
trEMBL	tr\|M0S236\|M0S236_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P22280_001}
TAIR	AT3G16730	2.00E-147	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000232	522751	544805	-

Transcript Sequence
>GWHTAAEX009124 GTTGTTCTTATATTAAGTTTCGTCGTTTTCAATAAAAACCGGATGGGTAATGATTTCGATCCAATGGCCAACAATCACTGAAATTCAAACCGACGGCCACATCGAACTGCATTAGCACAGCGCACAATTTTCAGAGCGGGATATCCAAAATCACATCGAACTGCATTAGTACACTTGCGCTCGCGCTCTACCCGCTCTCTTTCTCTAGGGTTTTGGTTGCAAATTCCTTCATTCCCTGTGTTCGGATCTGCCGAGCATTCTCCTCTTCCCTGCCATTCGCTGTAATCTGCAAACTAAATTCTAAATCCCCATAATCCATCGATTCGGTGGATTACGCAAACTGGGACGCGACTTTGTAGAAATGACTCTTTTGCTTCTAGTGGACGAAAATGAGCGATAAAAGGGAGCCTCCTGAGACCGGAGGCGAGACTTCCGGGCGGTTCGACTTTCTACAACCGAAACGAGATCTCCAGTCCAATTGGGAGGTTGATCTTGCCAAGAACTTGGAGGATTACCTTCTTAAGATTTGCTCCGGGGAGATCTCTTCTGAGCAGTCAGTCAACTTTGCGGAAGCTGCATTGCTTGTCCAAGGCTCGGTTCAAGTGTACAGCCGGAAGGTGGAGTATTTGTATTCTCTGGTCCTGCACGCCTTAGAGTTCCTTTCAAACAAGAGAAAAGATCAAGAAAAAGATTGTGCCAAACCTGATGATAGTGCACCTTCTGTAGCCATACATGAAGAAGATGATCTATTTTTGGGTTTAGATGATGTGCCTGTGGACGCAAAGAATTGTCGTGATGATGACAAGATTGAGATTTCTAATCATTTTGTAAAGGCTCCTACAAATTTGCTTGTGCTTGAAGGAGATTGCTTAGACACAAGTGGAGAAGCTAATGAACTAGAGTCCTACTTATTGGCTACTAGTGATTTCTATGGAGATTTTCTTCTGTTAGACCCTTGCGATGCAGGGGGAATAGATAGTTTTTTGCAGAATAATGCTTGTAATAAAGAACAGATTTCAAATCACAAGGGCGCCTCAGGGAGACCCAAGACCCACCGTGAAAATGTTTCCAAGACTCCTATTGGAAAAAGTGGCGGATCTATTAAAACAAGCCAAAGGAAGAACCAGAGCTTCAGTGCAACTGAGACATCTGGAGATGACTATACCTTCGAATTTGATAGCCAGAATGAATTATATGTACCAACTACTAATCCTAGTCACTCTGGGAATACATGTAATGCGGAAGGAACACATTCTAGAAATGCAGAAGAAACTCAGGATGATCATGATGAGGATGAAGATCCATGGAAGCCTTTGAATCCTCATGAACCTGGAAACTTGAAAGAAAGACCATTTAAAAAAGTTAGAAATTTAATAAAGCAGATAAATTCCATATCAAAAAGGAAAAATCAAAATTCTCAATTTCCTCTCGCCAAGCTAAATGGTGTTATAAGCCCAGAGTTTGCGGAATCAATTGAAGTGAAAGCTCGTCTTAAGGAAGCTCAGAATGCTGCCCAGTCTCCTGTTCTATACGAAAAGCTAAGAGGATCACTTTCCTTTGGATGCCAAGGGTCATATGACTTCTTTGGCCTTGGAGCTGAAGATCAGGAGGATGTTGGAGTTGAAAATGAGCTTCCTGATTTTGATCAAGATGATTACGATATGGGCATGGAACCTCCAAGTTATGGTGAGAAGGATACTATTGATCTAACACAAAATGGAGTGGATGGACTTGATTACAGTCAAAATCTTGAAGATCTTTGCAGGTCACATCTGGACGGTCTTCTCGCTAAGATAGCCGAAACTGAGAAACAGACAGAGTTAGCGGCACGGGTTTCTACATGGAAGCAGAACATAGAGAAAACTCTGGAAGACCATGATAATCGCCCTATTTTTGATATCCACCATTACGGCGAGAGAATTTTAGATAAATTCTCTCTAGAAGCTGGTGATAATGTAAGCATGACCTTTACTGATGTTGTTGGTGGACAGCCCAAGCATGAGGTTGCCAGAACATTTGCTGCCCTCCTCCAGCTGGTAAATAATGGAAATGTTGATTTGCAAAGGCCTCAGTCGAGCAGCGAATTGGTGTGCCACACAGCCAAAAAACCTTTTCAAATCAAGCTTCTTAACAGTGTAAGGCGAAAAGTTAAAGTCAAGACACCCGCAACGAATAAAAAGAGATTGCTGCCTCCTCTACACAGAGTCAACGAGGCTGCGCCACCGCTGAAGCCATCACGGGCGAATGACTCATTATCAGCAAAGCTCAAGACGGGAAGCTTGATTCGTCACACTTCCGATGGGAAGAGGAGGCGAAGATCTGGCGTTGCTGCTAAGCATCTGCATGCAGCTGCTGATATGTGAATGTACAATAAAAATAAATGCTATTTTTCAAAGCAATGTTAGTATTGCAATGTGCAGCTTAAAATAGCCCAACTTAGGCTCTATTTAAAAAAGCATCGAGGCAGGAAAATCTGTATTGTCATGTAGACTAGGAAATTTTGAACATTTCCACAGCCCTGTACTTAATATATAATCAATCAATTGAATCATAATTCGTATTGGTTCAATATCTTGATTATTATGTTTATTCATATGTTGTCTTCTTTGCTATTAGATGTTAGAGTATTAATTTATCTCTTGTAGATATTCGGTTTGTGCTTAGCATTTGTGTTTAACTAATTTAAACTTAGTTAAACACACCCACACAGCTAACGTATCTCATACTCTTATCTTGTGATATAAT

Network for GWHGAAEX009124

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06278.10	CNDH2_N	21	126	1.10E-35
PF16869.4	CNDH2_M	148	302	4.60E-23
PF16858.4	CNDH2_C	305	586	6.00E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.780
SRP064423	SRR2545915	Juvenile tuber	10.730
SRP108465	SRR5643513	five period of Gastrodia elata	27.870
	SRR5643514	five period of Gastrodia elata	12.020
	SRR5643515	five period of Gastrodia elata	20.400
	SRR5643524	five period of Gastrodia elata	10.940
	SRR5643525	five period of Gastrodia elata	6.710
	SRR5643528	five period of Gastrodia elata	17.600
	SRR5643658	five period of Gastrodia elata	5.260
	SRR5643659	five period of Gastrodia elata	11.280
	SRR5643660	five period of Gastrodia elata	10.730
	SRR5643661	five period of Gastrodia elata	8.620
	SRR5643662	five period of Gastrodia elata	6.970
	SRR5643663	five period of Gastrodia elata	9.010
	SRR5643664	five period of Gastrodia elata	8.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.980
SRP279888	Gastro	Gastrodia elata tuber	18.66
	Juven	Juvenile tuber	11.13
	Mother_Gastro	Mother tuber of Gastrodia elata	12.35
	Mother_Juven	Mother tuber of Juvenile	10.22