Detail information of GWHGAAEX009134/evm.TU.scaffold_237.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|431931209|ref|YP_007244255.1| | 0 | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit [Thioflavicoccus mobilis 8321] |
| KOG | KOG0623 | 0 | Glutamine amidotransferase/cyclase |
| nr | gi|672161912|ref|XP_008800784.1| | 0 | PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9SZ30|HIS4_ARATH | 0 | Cyclase (Precursor) |
| trEMBL | tr|M0TX77|M0TX77_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P03680_001} |
| TAIR | AT4G26900 | 0 | HIS HF |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000234 | 213052 | 284522 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009134
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00117.27 | GATase | 53 | 249 | 3.10E-20 |
| PF00977.20 | His_biosynth | 271 | 562 | 5.30E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01663 | HIS7 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of amino acids | map01230 | ||
| Histidine metabolism | map00340 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000105 | Biological Process | histidine biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016763 | Molecular Function | transferase activity, transferring pentosyl groups |
| GO:0000107 | Molecular Function | imidazoleglycerol-phosphate synthase activity |
| GO:0016833 | Molecular Function | oxo-acid-lyase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.010 |
| SRR2545915 | Juvenile tuber | 35.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.240 |
| SRR5643514 | five period of Gastrodia elata | 27.690 | |
| SRR5643515 | five period of Gastrodia elata | 25.070 | |
| SRR5643524 | five period of Gastrodia elata | 26.120 | |
| SRR5643525 | five period of Gastrodia elata | 17.780 | |
| SRR5643528 | five period of Gastrodia elata | 20.580 | |
| SRR5643658 | five period of Gastrodia elata | 21.900 | |
| SRR5643659 | five period of Gastrodia elata | 15.220 | |
| SRR5643660 | five period of Gastrodia elata | 12.590 | |
| SRR5643661 | five period of Gastrodia elata | 12.610 | |
| SRR5643662 | five period of Gastrodia elata | 17.300 | |
| SRR5643663 | five period of Gastrodia elata | 19.560 | |
| SRR5643664 | five period of Gastrodia elata | 12.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 49.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 43.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.07 |
| Juven | Juvenile tuber | 20.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.29 | |
| Mother_Juven | Mother tuber of Juvenile | 10.64 |