Detail information of GWHGAAEX009140/evm.TU.scaffold_237.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG04439.00E-21Actin regulatory proteins (gelsolin/villin family)
nrgi|743790049|ref|XP_010923069.1|1.26E-31PREDICTED: villin-1 isoform X6 [Elaeis guineensis]
Swissprottr|O65570|VILI4_ARATH3.00E-21Villin-4 {ECO:0000303|PubMed:10631247}
trEMBLtr|K7LAI4|K7LAI4_SOYBN2.00E-32Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G45216.1}
TAIRAT4G301609.00E-21villin 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000234588047605084+
Transcript Sequence

Network for GWHGAAEX009140

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02209.18VHP1641993.30E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0007010Biological Processcytoskeleton organization
GO:0003779Molecular Functionactin binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.320
SRR2545915Juvenile tuber11.640
SRP108465SRR5643513five period of Gastrodia elata10.570
SRR5643514five period of Gastrodia elata14.300
SRR5643515five period of Gastrodia elata12.250
SRR5643524five period of Gastrodia elata11.660
SRR5643525five period of Gastrodia elata6.440
SRR5643528five period of Gastrodia elata6.790
SRR5643658five period of Gastrodia elata7.540
SRR5643659five period of Gastrodia elata6.150
SRR5643660five period of Gastrodia elata5.780
SRR5643661five period of Gastrodia elata7.180
SRR5643662five period of Gastrodia elata4.510
SRR5643663five period of Gastrodia elata5.420
SRR5643664five period of Gastrodia elata7.820
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.900
SRR6049655Rhizomagastrodiae_C368-T10_good_19.570
SRR6049656Rhizomagastrodiae_C368-T07_good_111.080
SRR6049657Rhizomagastrodiae_C368-T07_good_19.880
SRR6049658Rhizomagastrodiae_C368-T04_good_111.340
SRR6049659Rhizomagastrodiae_C368-T04_good_113.740
SRR6049660Rhizomagastrodiae_C368-T01_good_18.150
SRR6049661Rhizomagastrodiae_C368-T04_good_112.230
SRR6049662Rhizomagastrodiae_C368-T01_good_111.430
SRR6049663Rhizomagastrodiae_C368-T01_good_117.130
SRR6049664Rhizomagastrodiae_C368-T10_good_116.850
SRR6049665Rhizomagastrodiae_C368-T10_good_116.850
SRP279888GastroGastrodia elata tuber 13.26
JuvenJuvenile tuber16.05
Mother_GastroMother tuber of Gastrodia elata 15.01
Mother_JuvenMother tuber of Juvenile 14.79