Detail information of GWHGAAEX009145/evm.TU.scaffold_237.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG03815.00E-55HMG box-containing protein
nrgi|720021792|ref|XP_010262835.1|5.13E-67PREDICTED: high mobility group B protein 1-like [Nelumbo nucifera]
Swissprottr|O49595|HMGB1_ARATH2.00E-55High mobility group B protein 1
trEMBLtr|W1PPZ9|W1PPZ9_AMBTC3.00E-66Uncharacterized protein {ECO:0000313|EMBL:ERN09781.1}
TAIRAT3G518805.00E-55high mobility group B1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000234672510682714+
Transcript Sequence

Network for GWHGAAEX009145

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00505.18HMG_box551244.30E-22
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHMG

KEGG pathway

KO Enzyme pathway mapID
K10802HMGB1 Base excision repair map03410
Autophagy - animalmap04140
Necroptosismap04217

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms287.570
SRR2545915Juvenile tuber423.310
SRP108465SRR5643513five period of Gastrodia elata391.190
SRR5643514five period of Gastrodia elata398.400
SRR5643515five period of Gastrodia elata380.040
SRR5643524five period of Gastrodia elata407.770
SRR5643525five period of Gastrodia elata410.320
SRR5643528five period of Gastrodia elata365.800
SRR5643658five period of Gastrodia elata363.290
SRR5643659five period of Gastrodia elata360.700
SRR5643660five period of Gastrodia elata342.740
SRR5643661five period of Gastrodia elata352.150
SRR5643662five period of Gastrodia elata322.580
SRR5643663five period of Gastrodia elata367.780
SRR5643664five period of Gastrodia elata351.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1234.670
SRR6049655Rhizomagastrodiae_C368-T10_good_1292.230
SRR6049656Rhizomagastrodiae_C368-T07_good_1251.180
SRR6049657Rhizomagastrodiae_C368-T07_good_1242.750
SRR6049658Rhizomagastrodiae_C368-T04_good_1215.840
SRR6049659Rhizomagastrodiae_C368-T04_good_1206.610
SRR6049660Rhizomagastrodiae_C368-T01_good_1216.580
SRR6049661Rhizomagastrodiae_C368-T04_good_1204.370
SRR6049662Rhizomagastrodiae_C368-T01_good_1230.010
SRR6049663Rhizomagastrodiae_C368-T01_good_1238.180
SRR6049664Rhizomagastrodiae_C368-T10_good_1306.790
SRR6049665Rhizomagastrodiae_C368-T10_good_1306.790
SRP279888GastroGastrodia elata tuber 507.33
JuvenJuvenile tuber483.54
Mother_GastroMother tuber of Gastrodia elata 337.49
Mother_JuvenMother tuber of Juvenile 419.16