Gene detail

Detail information of GWHGAAEX009154/evm.TU.scaffold_238.9

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672146075\|ref\|XP_008796975.1\|	0	PREDICTED: LOW QUALITY PROTEIN: putative nuclear matrix constituent protein 1-like protein [Phoenix dactylifera]
Swissprot	tr\|Q9FLH0\|NMCP_ARATH	1.00E-159	Putative nuclear matrix constituent protein 1-like protein
trEMBL	tr\|M0TBW8\|M0TBW8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P31730_001}
TAIR	AT5G65770	5.00E-159	little nuclei4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000243	325402	360682	+

Transcript Sequence
>GWHTAAEX009154 TTTACTTACTGCCCAACGTCTTGGGGGGCAGTGGAGCTTATTTGTCACAGAACTCACCGCGGTGATCATACCGCGCGAGAATCGCTGGTGTGCTCGCTCTGGAAAGAGGTAGAAAGAAGAAAAGAAGAGAAGAGCAACTCAGGGCAGTGAGCGCGCACTAGGTTATTGATTGATAGCATATGATCATTCTAGGGTTAGGAAATCCAGCGAAGGACGCCGAGATGTCGAACCGGCGACCAGTTGATTCGCCGGAGAGCTTCGGCGGAGCACGATCGGCTGGATACAGGACATCACCGTCTGCAGGTAACGGAGGAAGCTCTGTCAGGGAGGAAGCAATCTGGAAGCGACTTAAGGAAGCGGGGTTTGACGAGGAAACGATAAAGAGGAGGGATAAGGCTGCTCTGATCTCCTACGTTACGAGGCTCGAAACGCAGATCTATGATTACCAATGCAATATGGGACTTATTTTACTGGAAAAGAAAGATTTGGAGTCTAAATACAATGAACTTCAAATTTCTTCAGAATCAGCTGAGGTGATTTTTAAGCGTGATAAAGCTGTGAATCTTTCTGCTTTAGGGGAAGCAAGAAAGCGTGAAGAGAACCTGAAAAAGGCCCTGGGAATAGAAAAGGAATGTCTGGCGAATATTGAGAAAACCTTGCATGAAATGCGTGTTGAATCTGCTGAAATTAAAGTTGCTTATGAAAAAAAGTTGGTTGAGGCTCAATCAATGATGGAAACTGCACAAAGGATGCTTGAAGAGGCAAATTCGAAGGCTTGTGAAGCCGCAGCTTCTCAGGCAGAAGCAAGTCGTCGTCAGAACACTGCCATGAGAACTTTACAGGATATAGAGGCTCGCGAAGGTGAAGTTAGAAGAAGAATTGCTTCTTTCCAATCTGAGTGTGAGACTAGAGAAAAGGATATAAGTCTTCATAGGCAATCTCTGAATGACAGCCAACAAGTTTTGCGTCAAGAGCAAGAGAGATTAATGGAAGCGCAGATTCTACTCGGTCAAAGAGAAGAGCGGCTCCATGAAAAATTGAAAAAATTAGCCCTTTCTGAGAAAGAATTGGCGGAAGCAAAACTGAAATTTGAAGAAGATTCTTCAACTTTAAGAGATGAAAAGGTCAACCTGGAGCTTGATGTGTCTGCTCTTGTAGCTAGGGAAGAGTCTGTCATAAAAAGGGAAGCTTTTCTCGACAAAAAGGATCGGGAATTACTTATATTACAAGAAAAGATATCAAATAAAGAATTCGATGATATTCAAAGGCTCAAAGCTGAATATCAGCATTCGTTTGAAAGGAAAACTCTTGAATTTGAAGCTGAAACTGAGCAGAGAAGGATATCACTAGAGAATGAGATGGAAGTGAAAAGAAAAGACTGCGATGTGTTAGAGGCTGCGTTTAAGAAGAGGGAGGAACAGATAATGAAAATGGAAAATGCAGTTTCTGCCGAGCTCCGGGCTATTTCAGAGAAACAGAAGGATGCGATAGAGAAATTTCACCTTTTGGAGGAGAAAGAAAAGGCTCTACTCCTTGCAGAGAAGACATTGCAATCAAATCTGATGAATTTGCAAACAGAAAAAAAGGAAATTGACAATATGAAGAAGGAACTTCATAAAGATAAGGCATCACTTGAACATGAGAAGACAGAAATTCTTCATGCAGTCGAGAAACTAGCTATCACTTCAAACGAGAGAAACGAGCTTCTTGTTTTTGAAAAAAAATTGAAAGAAGAGATTGATAGCTTTAGGGCTCGAAAACTGGAACTTGAAGTTGAAACAGATAACCTGAGGTCAGAAAAGGAAAAGTTCGAAAGTAACTGGGACCTTATTGATGAGAAAAAAAAGGAGTTGAGGAATGAAGCCGATAGAATAGCTGAGGAAAGAAGAGCCGTTGCTATGTACCTTAGGAATGAACTCGACCGTTTGAATGCAGAGAAGGAAAGCTTGCATAATCAATTAAAACAAAACGCAGAAACCTTGTCTTTTGAGCGGGATGATTTTATTAGAAAGATGGAGCGCGAACAGTCGGATTGGTTTACTAAGTTTCATAAAGAAAAAGAAGGTTTTCTAAATAATGTTAAGCTTCAAAGGGAAGAACTGGTAACCAGCATTTGCAGCCAGCGAGAGGAAGTTGAGAATTATTTGAGAGGAAAGGAAGAAGCATTCAGGCAAGAAAAGATCAATGAGCTTCAGATCATTGCTTCACAAAAAGAAGACATTGCCAAACAGATGAACGTTGCCGTGTCCAATTTGAAAAGGCTTGACGATGAGAGAATGGAGATTGCCCGAGAACGAGAGCAGAATCAGGTGGAGCGGTCTGACATAAACTGTTCCATTGAAGTGCTTAACACACAACGTGAGAAGCTGCAAAAGCAAAGAGAACTTCTGCGTGCGGATCGTGAGGAAATTGACAGAAAAATTCAGCTTCTGATGAGATTAGAACATTCAAATATCGAATCGGAGAGCAGAACTCGATACTACTCAAATGCTAATGATTCAGTAATGAATATTGGCATGAAAGGACTGCGTTACAGAGAAGCCGGAAAGAATGACAAGTACCTTGATTACCTTAAGATGTCTCTAGCTGATGGAACGAAAGAGTTGTTTTTTGAGAATGCATCTAATTGTCCGTCGCCTCCTTCAGCTCATAAAACCTGGCTTAAGAAATGGGCCGAATTGATATTCAAGCCTTATCTAAAAAGAATTGCTGATTCTACGTGTAGGCAGGATTGCCTTCAAACTTCATCCAAAGAAGAGAAAAGCAGACCTCCGATGGAGAGCAACATGATTTCTACCACCGATGAGAAATATAATTCAAATGGAAGTGAAAATATGATGATGGTGAGAAGAAAGAGGCAATATAGTGTTGCATCAAACGATTATAGTAGTTTCAAGGGGGATCGTAATAACAAATATTTGAAGAAACCGAGGAAGGATAGTGTGGTTGATTTGCAGGCAGATCTAGACAATTGCGCATATGCCGATTATGGAATGTTGCTTGAGGATAATGTGGCGGCACCTGTTGCTCGACAAATTGCTGTGGCAGTAGAACACAACAGTGAGGATATCATTGAAGTGAGTGGAGACGGGTTTTTCAATACCTGACCCTTCGGTATATACTAATACATTATATATTTGTTTGTGTGAAGAAGCATCATTGTATTTGCTGATGTTTTTTTTGGGTGGGGTGTTCAAAAAATGTATGCTGTTGGTGGGTGTAAGAGTGAAAGAAATGTACAAGCATGACTGCTGTTTGGAATAGTGTTCAGATTTCTAGCCTAGTTATGTGTTCTTCATACTTCGAATTCTTGCTTATATATGTATGCAACATCCAAAATAAATATTAGTTATGTAGAAAGAATTTATTTAAGAGAGTTCAACTGTATTAGAA

Network for GWHGAAEX009154

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.910
SRP064423	SRR2545915	Juvenile tuber	41.500
SRP108465	SRR5643513	five period of Gastrodia elata	27.890
	SRR5643514	five period of Gastrodia elata	19.150
	SRR5643515	five period of Gastrodia elata	18.480
	SRR5643524	five period of Gastrodia elata	18.230
	SRR5643525	five period of Gastrodia elata	33.380
	SRR5643528	five period of Gastrodia elata	30.130
	SRR5643658	five period of Gastrodia elata	38.290
	SRR5643659	five period of Gastrodia elata	35.690
	SRR5643660	five period of Gastrodia elata	42.970
	SRR5643661	five period of Gastrodia elata	38.230
	SRR5643662	five period of Gastrodia elata	35.930
	SRR5643663	five period of Gastrodia elata	34.030
	SRR5643664	five period of Gastrodia elata	46.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.090
SRP279888	Gastro	Gastrodia elata tuber	55.47
	Juven	Juvenile tuber	50.71
	Mother_Gastro	Mother tuber of Gastrodia elata	27.39
	Mother_Juven	Mother tuber of Juvenile	39.59