Detail information of GWHGAAEX009155/evm.TU.scaffold_238.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186680988|ref|YP_001864184.1| | 9.00E-36 | tropinone reductase [Nostoc punctiforme PCC 73102] |
| KOG | KOG0725 | 1.00E-64 | Reductases with broad range of substrate specificities |
| nr | gi|743818457|ref|XP_010931230.1| | 8.47E-68 | PREDICTED: tropinone reductase homolog At1g07440-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|P50162|TRN1_DATST | 1.00E-60 | Tropinone reductase 1 |
| trEMBL | tr|B2BXL2|B2BXL2_ARALL | 3.00E-64 | Tropinone-reductase-like33 {ECO:0000313|EMBL:ABW81049.1} |
| TAIR | AT2G29370 | 1.00E-64 | NAD(P)-binding Rossmann-fold superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000243 | 380335 | 381379 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009155
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13561.5 | adh_short_C2 | 111 | 226 | 6.40E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08081 | TR1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Isoquinoline alkaloid biosynthesis | map00950 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.260 |
| SRR2545915 | Juvenile tuber | 0.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.580 |
| SRR5643514 | five period of Gastrodia elata | 3.990 | |
| SRR5643515 | five period of Gastrodia elata | 1.070 | |
| SRR5643524 | five period of Gastrodia elata | 2.000 | |
| SRR5643525 | five period of Gastrodia elata | 3.080 | |
| SRR5643528 | five period of Gastrodia elata | 1.020 | |
| SRR5643658 | five period of Gastrodia elata | 0.990 | |
| SRR5643659 | five period of Gastrodia elata | 0.580 | |
| SRR5643660 | five period of Gastrodia elata | 0.260 | |
| SRR5643661 | five period of Gastrodia elata | 0.390 | |
| SRR5643662 | five period of Gastrodia elata | 2.190 | |
| SRR5643663 | five period of Gastrodia elata | 0.980 | |
| SRR5643664 | five period of Gastrodia elata | 2.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.70 |
| Juven | Juvenile tuber | 3.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.17 | |
| Mother_Juven | Mother tuber of Juvenile | 0.94 |