Gene detail

Detail information of GWHGAAEX009156/evm.TU.scaffold_238.11

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743790722\|ref\|XP_010923238.1\|	4.40E-102	PREDICTED: uncharacterized protein LOC105046368 [Elaeis guineensis]
trEMBL	tr\|M0RKI1\|M0RKI1_MUSAM	6.00E-96	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P22560_001}
TAIR	AT5G51670	2.00E-35	Protein of unknown function (DUF668)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000243	384726	387056	+

Transcript Sequence
>GWHTAAEX009156 AAAAAAAAAAAAAAAGAGTAAGAAGCGCGTGAATAGCTAGCTATATAAGTGAAAAGAGTATAAATGGTTGACGAATATCCATCCTCGGACTTCTGGGCTTGGTGATGAAGAGGAGCGGTCAAAGATAGGAGCACAGAATTGTGGAGAAGAGAGGGAAGGGGGACGCAGCCCCCGGCATGGGAAAGAGAATAACGATAGGAATCATGGCGTTGGAATCAGCGGCGATCATGTCCCGGCTGATCTGTCTCCAGCGCGCCCTCTCGGACGCGTCTGTGCGCGCGCTGCGGTCCAACGGAATGCGGACCCAAGGCGTGTCCTACCTGACGTCGACGGACCAGCACTGGCTGCTCTCCCTGGCCTGCTCGGAGCTTCTCTCGGACCTGGATTCGGCGGCAGCGGCGGTGTCCCGCCTCACCTCCTTCACCCAGTCCCACCACGGCTTCCCGGTCGCCTACGCCCAGCTCAAGTCCGGGAGCTTCCCCTCCAAAGGCGGACCCAGCTTCAGGCCCAGGCGAATGGCAGAACAAATCGCCCTGACCAGAAAGCTCCTAGACGAGCTGGAGGCCCTGGAGGGCATGGGCAAGAAGAAGCCTCCCCCCTCCGAGGCGGAGCTCAGGTTCCAGAGGAGGAAGGTTGCGCGCCTCAGGTCGGCTTCCCTCTGGGGCAGGACCTTCGACGAGGCCGTCTCGCTCATGTCGGGAGCAGTGCTGGCCATCTTCGCTCGAATCTGCACCCTCTTCGCCCCTCTGCTCCCCTCTGCCCTCCTCCCGCCAGCCCCCGACCGCTTTCGCATCACCACCGCCTTCCGGCTAGCCCGAATTCACCCCCGCCGCCACTCCTCCTCCGGCCCCATGGACCGCCGTGCCCCGCCTTCCTGCAATTTCCTCCCCAACTCCTGCCCCATAATCCTCCGCGGCTCTCCCCCTAAAACTACTGCTAATGCCGATGCCAACTCGGTGGGCCACCTGGGCCTGGCGCTCCGGTACGCCAACCTGGTGCTCTCCGCCCAGAGATTTCTCCGCATGCGGTGCGGGCAAGAGAAAGCTGGTGAATTCGAGGCGGAGGCGACCAAGGATGATATTTACCGCCAGCTGCCAGTGAGGATGCGGGAGATGCTCAAGGCGAAGCTAAGGCGAAGATGGAGAGAGAGAGGCCCGCCAGACGGCGATCTGGCCAAAGGCTGGCGGGAGGCTGTGGAGAGGATTCTGGCCTGGCTGGCCCCGGTGGCCAGAGACACCATGACGTGGCACGAGGAGAGAACGCTGGATCGGAGGCGCCGCTTGGATCTCAGGCCCAGGCTTCTCTCCATCCAGACCTTCCACCTCTCCGACAAGGACAAGGTGGAAGCTGCCATCGTCGAGGTCTTGGTTGGCATCAGCTGCATGTGCTGGTACGACGCCAGCCCGCCGCACGCCCTGTGACGATAGGCTTCTTCCTCTACCTTTCATCTCATTTGTTTTGGCTCTAGAATGTAGATAGATACCCATTCCTATATTTTGTAAACTAGTCTCAGATTCATCATCCAGCCTCCTTCAGCTCTGTCTATTGATAGCATCCCATTTCTTTTTTCTTCTTCTTTATGATTCTTCGGAACATATCTGTGCTTTATTTTAACTGCTATGAAAAGAATTACACCAAAACAGCTTTTGCTCATCGTCATCATCATCTCATAACTCATCAAGGCTATTCTTTGTTTATGGCGGCCCTAATAATGTATTTGACTATTTCAAAGCATGTCTTAATGACACAATTTGTATGCACTCCGTCACTTGCCTTTCTCTTATTAAGGATAAGTCACACAATTTGTCACAAAGGCTATTTCTTACTCCTTTGGTAGCATGAGCTCTACTTTGTCTAGATGCACTTGATCATGATTCAATTTAGACACCCTAGATGGAGATGTGGCTACCATGGTTGAGTTGACTTTATTCATGTGTCACCTTTAATTAATTTCCTTCATAAATTTAGGTTTAATTATTTAATTGGATTAATGATTTTTAATAATCTATATGACTACAACGCCATTTCATTGTGTGAGAGATGTAACGAGTTGGTTGGTTGGTCTGATGAATTGACTTTGGTGGAGAGAGTCTGGTGTATGCTTTCGAATGCTATGATGGAATGACTGTTCTAAGTTGAGACCCTAGACTATGCTTATCACTTAGTAAACTGTTTGTCCTCTACAACTATTGGAAAGAAGACTTCGATAGAAATGTAGTAGGGAAAAACTGCTTCTGGTTTTGATCAGTTGAAATTTTTTGAATGTTCCACTTATTATTACGTGAAACTTGATAAGTTAGTATAAAAATGGGTATCTTTATTAGGTTCAAG

Network for GWHGAAEX009156

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11961.7	DUF3475	9	64	5.50E-17
PF05003.11	DUF668	261	355	2.30E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.740
SRP064423	SRR2545915	Juvenile tuber	9.810
SRP108465	SRR5643513	five period of Gastrodia elata	42.800
	SRR5643514	five period of Gastrodia elata	11.890
	SRR5643515	five period of Gastrodia elata	66.570
	SRR5643524	five period of Gastrodia elata	16.390
	SRR5643525	five period of Gastrodia elata	21.850
	SRR5643528	five period of Gastrodia elata	5.820
	SRR5643658	five period of Gastrodia elata	4.210
	SRR5643659	five period of Gastrodia elata	34.250
	SRR5643660	five period of Gastrodia elata	6.300
	SRR5643661	five period of Gastrodia elata	22.400
	SRR5643662	five period of Gastrodia elata	38.310
	SRR5643663	five period of Gastrodia elata	16.800
	SRR5643664	five period of Gastrodia elata	36.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	56.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	71.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.370
SRP279888	Gastro	Gastrodia elata tuber	9.15
	Juven	Juvenile tuber	2.75
	Mother_Gastro	Mother tuber of Gastrodia elata	90.98
	Mother_Juven	Mother tuber of Juvenile	27.93