Detail information of GWHGAAEX009160/evm.TU.scaffold_238.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1488 | 0 | Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) |
| nr | gi|720003019|ref|XP_010256854.1| | 0 | PREDICTED: pumilio homolog 2-like [Nelumbo nucifera] |
| Swissprot | tr|Q9ZW06|PUM2_ARATH | 0 | Pumilio homolog 2 |
| trEMBL | tr|F6HNV5|F6HNV5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56325.1} |
| TAIR | AT2G29190 | 0 | pumilio 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000243 | 434575 | 457894 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009160
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07990.11 | NABP | 284 | 695 | 5.40E-133 |
| PF00806.18 | PUF | 697 | 730 | 3.10E-06 |
| PF00806.18 | PUF | 735 | 763 | 1.40E-07 |
| PF00806.18 | PUF | 769 | 799 | 6.00E-06 |
| PF00806.18 | PUF | 807 | 837 | 7.20E-06 |
| PF00806.18 | PUF | 842 | 874 | 1.00E-08 |
| PF00806.18 | PUF | 877 | 910 | 5.20E-08 |
| PF00806.18 | PUF | 914 | 946 | 5.90E-06 |
| PF00806.18 | PUF | 963 | 989 | 4.10E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.820 |
| SRR2545915 | Juvenile tuber | 45.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.940 |
| SRR5643514 | five period of Gastrodia elata | 37.070 | |
| SRR5643515 | five period of Gastrodia elata | 39.250 | |
| SRR5643524 | five period of Gastrodia elata | 39.940 | |
| SRR5643525 | five period of Gastrodia elata | 30.300 | |
| SRR5643528 | five period of Gastrodia elata | 28.660 | |
| SRR5643658 | five period of Gastrodia elata | 27.370 | |
| SRR5643659 | five period of Gastrodia elata | 43.620 | |
| SRR5643660 | five period of Gastrodia elata | 47.970 | |
| SRR5643661 | five period of Gastrodia elata | 41.690 | |
| SRR5643662 | five period of Gastrodia elata | 46.120 | |
| SRR5643663 | five period of Gastrodia elata | 41.990 | |
| SRR5643664 | five period of Gastrodia elata | 51.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 36.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 39.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 35.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 44.19 |
| Juven | Juvenile tuber | 51.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.73 | |
| Mother_Juven | Mother tuber of Juvenile | 44.66 |