Gene detail

Detail information of GWHGAAEX009168/evm.TU.scaffold_238.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502744\|ref\|YP_001958461.1\|	2.00E-23	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|743780699\|ref\|XP_010920578.1\|	0	PREDICTED: protein kinase APK1B, chloroplastic-like [Elaeis guineensis]
Swissprot	tr\|Q06548\|APK1A_ARATH	0	Protein kinase APK1A, chloroplastic (Precursor)
trEMBL	tr\|M0TS85\|M0TS85_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P20820_001}
TAIR	AT1G07570	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000243	587302	602506	-

Transcript Sequence
>GWHTAAEX009168 ATTTTTAGTGCTTCCAACCCATTTCTTTTGGGAGCACTATCTGGGAAGCAAGTTTCGTCGAAGTTCAATCGGTACCGACTACCGAGGAAGGCTTGCAGGGCTCAAATCGGCAATTTTTATCAGGGATCTCGTAGGGAACTGGCTTTCTTTCCCTTTCAACCATAACTTCGGATAATCTTGTTGAAGGCGCTGGGCAAAGCTAGGAAAAGGAGTGCTGATCGCTCTAAATGGGAAATTGCTGGGGGGGGCAAGTCAAGGCAGAGAGTCCCCAGCACTCTTCAGGGATCAAAATTCATTCTGGTTTAAGCAGTTATAGCAGCAAAGTTTCCGTTCCTCCAACACCAAAAAGTGACGGGGAAATCTTGCAATCATCTAATGTCAGGAGCTTTTCTTTCAGCGAGCTAAAAACTGCCACCAGGAATTTCAGGCCTGACAGTGTGTTAGGTGAAGGAGGCTTTGGTTCAGTATTTAAGGGATGGATTGATGAGAACACATTCACTCCTACCAAACCAGGAAGTGGGATTGTTATTGCAGTAAAGAGGCTCAATCAGGAAGGATTTCAGGGCCACAAAGAATGGTTGGCAGAGGTAAATTACCTTGGTCAGTTGTCCCATCCGAACCTTGTGAAGTTGATTGGATATTGCCTGGAGGATGATCATCGCTTACTTGTGTATGAGTTCATGCCTCGGGGAAGCCTAGAGAATCATCTGTTCCGCAGAGGATCTTACTTCCAACCCCTTTCTTGGAATCTTCGGATGAAGGTTGCTCTAGGCGCTGCAAAAGGACTTGCCTTTTTGCATAGCACCGAGGCAAAAGTTATTTACCGTGATTTTAAAGCATCTAATGTTTTACTTGATTCGAACTACAATGCAAAACTGTCTGACTTTGGGTTGGCCAAAGATGGTCCTACCGGTGACAAAAGCCACGTTTCAACTCGGGTTATGGGAACTTATGGCTATGCTGCACCCGAATATCTTGCTACAGGTCACCTGTCCACGAAGAGCGACGTGTACAGCTTTGGGGTTGTCCTTCTGGAGATGCTCTCCGGCCGCCGCGCCATAGACAAGAACCGTCCGTCGGGAGAGCACAACCTAATCGAATGGGCGAGGCCCTATCTTTCGAACAGGAGAAAGCTTTTTCGCATTCTCGACGGCCGGCTCGACGGGCAATATTCGCTTGACGGAGCCCAGCGGGCGGCTGCGCTCGCCCTCCAGTGCCTTTCGAGTGAGGCTCGGTTCAGGCCGAGCATGAACCAGGTTGTTTCCTCGTTAGAGCAGCTTCAGGCCCCCAATGATGCGGCGGCGAAGAACCCCCCGCAGCAGCCGGAGTTTAGGAAGGCTGCCGGCAAAAACAACAGCCCCGGACGCCAATCTCCGCGGAAGACGTCTGATATTCCTGTGAACAATAATACGGCTTATCCTAGACCGATGGCTTCCCCCCTCTACTCATAGATTCGCAGCGAATCTGTATAGTTTGGCTGACTGACTGTATTGAGAGCCTTCTTAACTTACAACCTGATCGTTATTATGAGGCCTGTGCTTTTTTCAATATGATGCTGCATTTTATTTTATTTTTCACCTTTATTTAATTATTTGTTAGCTTTTCTTAAGGGTCCTAAAACAAGTGAGAAAAGTTTTTCATTTTGTTTATTTGTAATGTATTTGAAGTGATTTTCTTAATCCATTATTTGTAATGCGAAAAGCTTCATTTATAGCTTTGGAGGAGAGAAAACTGATGCATCATAAATTAGTGCATCACTGATTTTGCTTTGTAGTTTATATGGAATGTTTAAAGTATTATGTAAAGAAAAAAGCTTTGGTGAAAGTTCTCTGCATAGTTCTAATTTTTTTT

Network for GWHGAAEX009168

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	70	348	5.10E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.660
SRP064423	SRR2545915	Juvenile tuber	40.280
SRP108465	SRR5643513	five period of Gastrodia elata	28.160
	SRR5643514	five period of Gastrodia elata	28.240
	SRR5643515	five period of Gastrodia elata	35.030
	SRR5643524	five period of Gastrodia elata	28.730
	SRR5643525	five period of Gastrodia elata	53.000
	SRR5643528	five period of Gastrodia elata	61.060
	SRR5643658	five period of Gastrodia elata	46.650
	SRR5643659	five period of Gastrodia elata	29.630
	SRR5643660	five period of Gastrodia elata	31.930
	SRR5643661	five period of Gastrodia elata	30.510
	SRR5643662	five period of Gastrodia elata	35.240
	SRR5643663	five period of Gastrodia elata	28.990
	SRR5643664	five period of Gastrodia elata	36.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	84.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	100.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	66.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	83.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.640
SRP279888	Gastro	Gastrodia elata tuber	59.79
	Juven	Juvenile tuber	29.26
	Mother_Gastro	Mother tuber of Gastrodia elata	94.14
	Mother_Juven	Mother tuber of Juvenile	47.77