Detail information of GWHGAAEX009169/evm.TU.scaffold_238.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|84490268|ref|YP_448500.1|2.00E-08replication factor A [Methanosphaera stadtmanae DSM 3091]
KOGKOG08510Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins
nrgi|743780737|ref|XP_010920581.1|0PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like [Elaeis guineensis]
Swissprottr|Q9FHJ6|RFA1C_ARATH0Replication protein A 70 kDa DNA-binding subunit C
trEMBLtr|A0A0A0L503|A0A0A0L503_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN55692.1}
TAIRAT5G454000Replication factor-A protein 1-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000243603298614322+
Transcript Sequence

Network for GWHGAAEX009169

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04057.11Rep-A_N61035.90E-31
PF01336.24tRNA_anti-codon2493355.70E-12
PF16900.4REPA_OB_23594633.10E-29
PF08646.9Rep_fac-A_C5216728.20E-51
PF00098.22zf-CCHC7617766.40E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07466RFA1, RPA1, rpa DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0006260Biological ProcessDNA replication
GO:0006310Biological ProcessDNA recombination
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.400
SRR2545915Juvenile tuber10.210
SRP108465SRR5643513five period of Gastrodia elata14.660
SRR5643514five period of Gastrodia elata17.650
SRR5643515five period of Gastrodia elata11.880
SRR5643524five period of Gastrodia elata14.120
SRR5643525five period of Gastrodia elata23.740
SRR5643528five period of Gastrodia elata16.810
SRR5643658five period of Gastrodia elata24.450
SRR5643659five period of Gastrodia elata21.290
SRR5643660five period of Gastrodia elata32.510
SRR5643661five period of Gastrodia elata21.880
SRR5643662five period of Gastrodia elata23.760
SRR5643663five period of Gastrodia elata18.720
SRR5643664five period of Gastrodia elata31.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.180
SRR6049655Rhizomagastrodiae_C368-T10_good_119.430
SRR6049656Rhizomagastrodiae_C368-T07_good_123.140
SRR6049657Rhizomagastrodiae_C368-T07_good_139.860
SRR6049658Rhizomagastrodiae_C368-T04_good_144.820
SRR6049659Rhizomagastrodiae_C368-T04_good_156.990
SRR6049660Rhizomagastrodiae_C368-T01_good_135.800
SRR6049661Rhizomagastrodiae_C368-T04_good_147.760
SRR6049662Rhizomagastrodiae_C368-T01_good_124.880
SRR6049663Rhizomagastrodiae_C368-T01_good_125.530
SRR6049664Rhizomagastrodiae_C368-T10_good_118.840
SRR6049665Rhizomagastrodiae_C368-T10_good_118.840
SRP279888GastroGastrodia elata tuber 20.24
JuvenJuvenile tuber20.93
Mother_GastroMother tuber of Gastrodia elata 42.35
Mother_JuvenMother tuber of Juvenile 16.01