Gene detail

Detail information of GWHGAAEX009170/evm.TU.scaffold_238.26

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0700	1.00E-158	Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase
nr	gi\|297746088\|emb\|CBI16144.3\|	2.85E-179	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9ZV25\|P2C23_ARATH	4.00E-159	Probable protein phosphatase 2C 23
trEMBL	tr\|M0S8H6\|M0S8H6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P16350_001}
TAIR	AT2G28890	1.00E-158	poltergeist like 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000243	617178	620525	+

Transcript Sequence
>GWHTAAEX009170 TTCATAATGCTTTTTCCATCGCCTCCATTAATTTCCTCCAATTATAATTTCAACCCTCATTCAATGCCCTAAAAACCCTGCTGCCATGAAAAGTCAAGTTTTGAAATTCTCCATCACCAATATCTTTTGACTTTCTAAGTTGTTCCAAGAAAAATACAGATTTATATCTTTGTTTAGAGCTATAAGAAGGCTACAATTTCCTTTTCTTAAATATTTTTTAATTTTATGGCTCAAGTTTTTATATATTGCATCTTAATATTTTGGAGAATTTGCTCTTATTTTCTTACAAAAGTTAATTTTTATTTTGTGTTTTGGTTTGTATAGCACAGCTCACATGGTAGATGGACTGAACTCGGGTCAACGCCCCATGGCTTTTTAATTAGTAATTCTGCGGTCACAGCATTCAACCCCTGCTGCCCTCCACCTTGCACCCACCCCACTCTCTCGTCCGCCAAGTCAACTCCGCCCATGGGAAACTCCCTTCCCAACCTCAAAGACTGCTTTTTCCGCTGCCGGCGGCGGCGGGACACAGCCGTGGTGACGTCGGAGCCGTACGACGACGGCCTGGGGCACTCCTTCTGCTACCGGTCTAAGATGGCCAGGTCCGAGGAGGCTGGATCGGCCGCTTTCCGGTCCATCTCTGGCGCCTCTCTCAGCGCCAACGCCGCCACTCCGCTCTCGACCGCCATGGATTCGGGAGCCTGCGCCGCCTTCCAGAGCTCCACGTGCTTCTCCTCCGGGCCGATCGAGCCGGCCGGGCTCCTGTCCGGCCCTCCCGACCGGCCCTCCCTCCGGCGCACCCTCTCCCGCGGGCTCCGCAGAGCTCTGACCCGGCCCTCCGTGTCGGCTGACCGCCTCCACTGGGCCCAGGGCCGCGCTGGAGAAGACCGCGTCCACGTGGTCGTCTCCGAGCCGCAGGGATCCCTCTTCGTGGGAATCTACGACGGCTTTAACGGCCCTGATGCCACCGACTACCTTCTCTCCAATCTCTACCCCGCCCTCCAGACCCAGCTCCAGGGCCTTCTCTGGGAGGAGACCCACCCCAAGGTTCTCAAAGCCCTGTCCCTGGCTCTGAAGAACACAGAGGAGGCTTTCCTCGAAACTGCCGACATGATCGCCTCCCAGAACCCGGAGCTCGCCCTCATGGGGTCCTGCGTTCTTGTCATGCTCATGAAAGGGGAACACCTTTATCTCATGAACGTCGGAGACAGCCGAGCCGTTCTGGCCAAATTCCCAGACTCTCTCATCAACTTGGAGAGCGTTGTTGAGGACTCTGTTGCTGCTCAGATAAACGCAGTCCAGAATTTAGTTTCGTGTCAGCTCACAGAGGATCACAGCACCAGCGTGGAAGAGGAAGTTAAGAGAATAAGAAGTGAGCATCCTGAGGACGCTTCAGCCATTGTGAATGATAGAGTTAAGGGATCGTTGAAGGTGACCAGAGCTTTTGGAGCTGGGTTTTTGAAGAAGCCCAAATGGAATAATGCGCTCTTAGAAATGTTCAGAATTGATTATGTTGGAACATCGCCATACATTACATGCAGCCCCTTTCTTTGCCATCATAGGCTCAGCTCCAGAGACAGATTCATAATTCTTTCATCGGACGGGCTTTATCAGTACTTTACGAATGAAGAAGCCGTCTCAGAAGTCGAATCATTTATGTCTACAAACCCGGAGGGCGATCCGGCTCAGCACCTTGTCGAAGAAGTTCTCGTTCGCGCTGCCAAAAATGCCGGCATGGATTTTCATGAACTGCTTGAGATTTCTCAAGGAGACAGAAGAAGATACCACGACGATGTCTCCATTATCGTCATCTCTTTCGAGGGAAGGATATGGAGATCTTGTATGTAAATAGAGAGGACATATAATATATAGAGTTCAGAGTTTCACTGAAAATATATGTTATCCTTTTTTTGTTCTACTGAACAGCTTAGTGCTGATTTAAGTAGAAGAAAGCAGAACAAAATGTAATGTTATAATAAATGGTTCTATCATCTTAAAAATGCCAATCAGAGGCCAATCGGTCTTTTTTTACCGACTGCTGCCTTGAGCCCAAGTTCACTTTGATCTCTCTCTGCCTTTAGTAACTGCATGCTATTATGCTGATGTTTGTTGTTATAGTGTATGCAAATTCTCCTAAAGAAGATTTAGGCCAACCATTTTACACTTAACATGGTTGTGTAGGGATGAAGCCATGGATATCTCCAATGTTTGAGAATTGAACCGAATTGGTCTGCCTCAATTTGAGTTCGGCATGGCTAATGGACTCGATGATGAATGCTAAAAAACCGGACAAAATCGATTGACCTGTTTGGTTCTCTATCTGGCTTGAGCAAGATGAAGAATGTACTTTTGTTTAATGTTTTTTCTTTATAATTTTTGTTAGAAAAGAGGTGAATTTAAAGAAAAAGTAAAATAAGTACATCTTCTACTTGATTTTAACCTAATACATATAATTAACA

Network for GWHGAAEX009170

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.20	PP2C	154	420	4.70E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.110
SRP064423	SRR2545915	Juvenile tuber	3.510
SRP108465	SRR5643513	five period of Gastrodia elata	24.140
	SRR5643514	five period of Gastrodia elata	11.650
	SRR5643515	five period of Gastrodia elata	21.660
	SRR5643524	five period of Gastrodia elata	15.820
	SRR5643525	five period of Gastrodia elata	10.450
	SRR5643528	five period of Gastrodia elata	12.870
	SRR5643658	five period of Gastrodia elata	8.000
	SRR5643659	five period of Gastrodia elata	8.720
	SRR5643660	five period of Gastrodia elata	4.910
	SRR5643661	five period of Gastrodia elata	12.250
	SRR5643662	five period of Gastrodia elata	12.450
	SRR5643663	five period of Gastrodia elata	10.160
	SRR5643664	five period of Gastrodia elata	9.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.560
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.050
SRP279888	Gastro	Gastrodia elata tuber	10.56
	Juven	Juvenile tuber	7.15
	Mother_Gastro	Mother tuber of Gastrodia elata	33.48
	Mother_Juven	Mother tuber of Juvenile	25.47