Detail information of GWHGAAEX009183/evm.TU.scaffold_239.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 1.00E-28 | two component regulator [Flavobacterium johnsoniae UW101] |
| KOG | KOG0619 | 3.00E-136 | FOG: Leucine rich repeat |
| nr | gi|743856032|ref|XP_010941739.1| | 3.28E-158 | PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL1 [Elaeis guineensis] |
| Swissprot | tr|C0LGP9|IMK3_ARATH | 1.00E-31 | Probable leucine-rich repeat receptor-like protein kinase IMK3 (Precursor) |
| trEMBL | tr|M0T9L8|M0T9L8_MUSAM | 9.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P23700_001} |
| TAIR | AT1G03440 | 3.00E-136 | Leucine-rich repeat (LRR) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000236 | 697978 | 699821 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009183
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 32 | 70 | 1.50E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.170 |
| SRR2545915 | Juvenile tuber | 0.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.150 |
| SRR5643514 | five period of Gastrodia elata | 3.290 | |
| SRR5643515 | five period of Gastrodia elata | 1.690 | |
| SRR5643524 | five period of Gastrodia elata | 2.040 | |
| SRR5643525 | five period of Gastrodia elata | 1.040 | |
| SRR5643528 | five period of Gastrodia elata | 0.910 | |
| SRR5643658 | five period of Gastrodia elata | 0.560 | |
| SRR5643659 | five period of Gastrodia elata | 0.710 | |
| SRR5643660 | five period of Gastrodia elata | 0.880 | |
| SRR5643661 | five period of Gastrodia elata | 0.710 | |
| SRR5643662 | five period of Gastrodia elata | 0.810 | |
| SRR5643663 | five period of Gastrodia elata | 0.650 | |
| SRR5643664 | five period of Gastrodia elata | 0.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.64 |
| Juven | Juvenile tuber | 2.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.89 | |
| Mother_Juven | Mother tuber of Juvenile | 0.43 |