Gene detail

Detail information of GWHGAAEX009184/evm.TU.scaffold_239.17

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	5.00E-112	FOG: PPR repeat
nr	gi\|672139529\|ref\|XP_008793549.1\|	1.66E-165	PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Phoenix dactylifera]
Swissprot	tr\|Q9SY02\|PP301_ARATH	1.00E-112	Pentatricopeptide repeat-containing protein At4g02750
trEMBL	tr\|W5G3I4\|W5G3I4_WHEAT	2.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5DS_A0074F7DC.1}
trEMBL	tr\|W5G3I4\|W5G3I4_WHEAT	5.00E-36	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5DS_A0074F7DC.1}
trEMBL	tr\|W5G3I4\|W5G3I4_WHEAT	6.00E-31	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5DS_A0074F7DC.1}
trEMBL	tr\|W5G3I4\|W5G3I4_WHEAT	1.00E-30	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5DS_A0074F7DC.1}
TAIR	AT4G02750	5.00E-112	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000236	702841	704747	-

Transcript Sequence
>GWHTAAEX009184 ATGGAGCTCAGTGCTCACGGGGTACACCCTAAGACGAGACATGGCGGAGGCTTTGAGGTTTTCCGAAATGATGCCGGAGAAATATATGTGGTCTCTTGGAACATGATGGTTGAGGGGTTTCTCCAAGCCGGAGAACTGGAATCAGCTCGCAGATTTATTATGAAGACTCCCTGCCCTAATGCCGCGTCTTGGGTCACCATGTTGAATGCATTATCCAGGCATGGGAACATCGATGAAGCCAGAAGAATGTTCGATATGATGCAGGCGAGGAATTCTGTCGCCTTGAATGCTATGATTTCCGGATGCGCCAGCAATGGAAGAATGGATAAAGCTGTGGAGCTGCTCGAGAGGATGCCCACAAAGACTGCGTTTTCATTGAATACCGTGATCGTCGGGCATGCTCGGCAGGGAAAAATGGATGAAGCCCTTGAAGTTTTCAAGCATATGAAGGAGATGAATACAGTATCTTGGAATTCCATCATCTCTGGACTCACTCAAAATGGATTTCACTCTGATGCACTTCAACATTATGTGTTGATGAGAGACGAGGGAGGGAAGCCGGATTGGCGCACGTACGCCAGTTGCCTCACTGCTTGCGCTCATCTTGCTGCTTTGCAGATCGGGAAGCAGCTTCATCTTCTTCTTCTGAAGAATGGGATTGCGGTTGATCTATTTGCCGGTAATGCTTTGATGAATATGTACGTGAGATGTGGAAGGATCTCGAGTGCCAGGCAAGTATTTGATGAGATTGTGTCAACTGATGTTATTTCGTCAAACACACTGATTGTTGGCTATGCATTGAATGGTTTTGGGAGGGAGACGATATCGCTTTTCAAAGAGATGATTGTTAATGGGTTTAAGCCTGATGAAATCACTTTTGTCGGCGTTCTATCGTCCTGCAGCCATGCAAGGATGATCGAAAAAGGATTGAAATATTTTAATTCTATGAGCAGAGCCCATTCTGTGGAACCTGTGGCTGAACACTATGCCAGTGTGGTCGATCTTCTCGGTCGTGCTGGAAGACTGGAAGAAGCTTATAAAGTGGTTGCAGATATGTCTGATGAAGCAAATGCTGGTGCTTGGGGAGCTTTGCTGGGGGCTTGCAGAATGCACGGGAATCCAGATATCGCAAACTTTGCTGCTGAAAAGCTTTTCGAAATAGAACCTCTTAAGACTTCCAACTTCGTTCTCTTGTCGAACATGCATGCTGATGATGGGGGATGGGAAGAAGTGGGCTGTATGAGGGTTGTGATGAAAGGAATAGGAGTGCAGAAGTAATTCAATTGCAGTTGGATCAGTATAATAATGAAGTGCGCTCCTTTGTTTCTGATGATACTATGCAGCCCAGAACAGCTGAAATTGGCTTTGTGCTTGAGGTGATCTGTGACCATATGAGAAATACAGAAATTGTGTCTTTGTGAATTCTCTTAGATTGTGGATGAACACTTGAGAGAGCTGCTATTAATGCTTTGTTGGACGAAGCAGATGGATGGAGATGCTTCAATGAGCAGGTTTTCTCAAGGCAGGAGAAAACTTCATCAGAATTCAAACGGAACTGCTAAGACATGGTGACAAAATGCACAATTGCATTTTGCTTCTAATACAAAGCAAGCAAAAAGGCCTCAACACCTCTATTCATATGTTTATACCATTGAATCGGCCTTCTATTATAATATAATCAAATGTTTTGGAGTATTGTAAAAACTTCAGTTTGTATCTTACCTGAAGGCTCATCATTTGAAATTGACGGTGAGTAGTCACTTTCCCATCTTGAAAGATACCTGTTTATGAATCCTTTATTTACATTTATTTTCTTATTCGTTTTATTTTAGAAATGGAATGCAATGCCCATTTCCTTTAGCCCTTGGCATGGTTTTGTTATTTGAATTGGGATTCATCAAGTTATT

Network for GWHGAAEX009184

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	31	52	0.1
PF01535.19	PPR	63	91	1.70E-06
PF01535.19	PPR	93	119	2.90E-07
PF13041.5	PPR_2	153	200	8.00E-09
PF01535.19	PPR	228	252	0.005
PF13041.5	PPR_2	254	300	1.90E-07
PF01535.19	PPR	329	353	0.084

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.240
SRP064423	SRR2545915	Juvenile tuber	0.270
SRP108465	SRR5643513	five period of Gastrodia elata	2.620
	SRR5643514	five period of Gastrodia elata	2.360
	SRR5643515	five period of Gastrodia elata	2.210
	SRR5643524	five period of Gastrodia elata	2.000
	SRR5643525	five period of Gastrodia elata	0.760
	SRR5643528	five period of Gastrodia elata	0.340
	SRR5643658	five period of Gastrodia elata	0.380
	SRR5643659	five period of Gastrodia elata	1.870
	SRR5643660	five period of Gastrodia elata	1.590
	SRR5643661	five period of Gastrodia elata	1.740
	SRR5643662	five period of Gastrodia elata	1.700
	SRR5643663	five period of Gastrodia elata	1.900
	SRR5643664	five period of Gastrodia elata	1.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.840
SRP279888	Gastro	Gastrodia elata tuber	1.48
	Juven	Juvenile tuber	2.31
	Mother_Gastro	Mother tuber of Gastrodia elata	0.89
	Mother_Juven	Mother tuber of Juvenile	1.40