Detail information of GWHGAAEX009186/evm.TU.scaffold_239.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|226315525|ref|YP_002775421.1| | 5.00E-51 | ribosomal RNA small subunit methyltransferase G [Brevibacillus brevis NBRC 100599] |
| nr | gi|695059311|ref|XP_009418010.1| | 1.60E-119 | PREDICTED: uncharacterized protein LOC103998296 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0U1D0|M0U1D0_MUSAM | 6.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P18230_001} |
| TAIR | AT5G50110 | 3.00E-96 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000236 | 727284 | 749365 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009186
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02527.14 | GidB | 85 | 275 | 1.50E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006364 | Biological Process | rRNA processing |
| GO:0008649 | Molecular Function | rRNA methyltransferase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.850 |
| SRR2545915 | Juvenile tuber | 4.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.550 |
| SRR5643514 | five period of Gastrodia elata | 4.290 | |
| SRR5643515 | five period of Gastrodia elata | 3.800 | |
| SRR5643524 | five period of Gastrodia elata | 3.640 | |
| SRR5643525 | five period of Gastrodia elata | 3.780 | |
| SRR5643528 | five period of Gastrodia elata | 3.410 | |
| SRR5643658 | five period of Gastrodia elata | 3.730 | |
| SRR5643659 | five period of Gastrodia elata | 6.770 | |
| SRR5643660 | five period of Gastrodia elata | 4.600 | |
| SRR5643661 | five period of Gastrodia elata | 6.180 | |
| SRR5643662 | five period of Gastrodia elata | 4.260 | |
| SRR5643663 | five period of Gastrodia elata | 5.600 | |
| SRR5643664 | five period of Gastrodia elata | 3.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.69 |
| Juven | Juvenile tuber | 3.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.86 | |
| Mother_Juven | Mother tuber of Juvenile | 2.03 |