Detail information of GWHGAAEX009187/evm.TU.scaffold_239.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41970FOG: PPR repeat
nrgi|743769073|ref|XP_010914819.1|0PREDICTED: pentatricopeptide repeat-containing protein At3g56550 [Elaeis guineensis]
Swissprottr|Q9LXY5|PP284_ARATH0Pentatricopeptide repeat-containing protein At3g56550
trEMBLtr|M0S154|M0S154_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P18960_001}
TAIRAT3G565500Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000236752693754878+
Transcript Sequence

Network for GWHGAAEX009187

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_21692161.50E-10
PF01535.19PPR2452700.00083
PF01535.19PPR2733020.00013
PF14432.5DYW_deaminase4455744.20E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.850
SRR2545915Juvenile tuber2.380
SRP108465SRR5643513five period of Gastrodia elata2.530
SRR5643514five period of Gastrodia elata2.580
SRR5643515five period of Gastrodia elata2.730
SRR5643524five period of Gastrodia elata2.280
SRR5643525five period of Gastrodia elata1.570
SRR5643528five period of Gastrodia elata1.330
SRR5643658five period of Gastrodia elata1.920
SRR5643659five period of Gastrodia elata3.940
SRR5643660five period of Gastrodia elata3.520
SRR5643661five period of Gastrodia elata3.920
SRR5643662five period of Gastrodia elata3.390
SRR5643663five period of Gastrodia elata3.310
SRR5643664five period of Gastrodia elata4.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.200
SRR6049655Rhizomagastrodiae_C368-T10_good_11.560
SRR6049656Rhizomagastrodiae_C368-T07_good_12.770
SRR6049657Rhizomagastrodiae_C368-T07_good_11.740
SRR6049658Rhizomagastrodiae_C368-T04_good_12.630
SRR6049659Rhizomagastrodiae_C368-T04_good_12.890
SRR6049660Rhizomagastrodiae_C368-T01_good_12.750
SRR6049661Rhizomagastrodiae_C368-T04_good_13.250
SRR6049662Rhizomagastrodiae_C368-T01_good_14.420
SRR6049663Rhizomagastrodiae_C368-T01_good_15.130
SRR6049664Rhizomagastrodiae_C368-T10_good_13.040
SRR6049665Rhizomagastrodiae_C368-T10_good_13.040
SRP279888GastroGastrodia elata tuber 3.63
JuvenJuvenile tuber2.40
Mother_GastroMother tuber of Gastrodia elata 1.50
Mother_JuvenMother tuber of Juvenile 1.17