Detail information of GWHGAAEX009192/evm.TU.scaffold_24.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389876722|ref|YP_006370287.1| | 3.00E-12 | putative iron/ascorbate oxidoreductase [Tistrella mobilis KA081020-065] |
| KOG | KOG0143 | 5.00E-60 | Iron/ascorbate family oxidoreductases |
| nr | gi|672179554|ref|XP_008809946.1| | 9.82E-87 | PREDICTED: gibberellin 2-beta-dioxygenase 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q9XHM5|G2OX2_PEA | 4.00E-71 | Gibberellin 2-beta-dioxygenase 2 |
| trEMBL | tr|M0RS62|M0RS62_MUSAM | 3.00E-77 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P14320_001} |
| TAIR | AT1G47990 | 5.00E-60 | gibberellin 2-oxidase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000021 | 304998 | 329021 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009192
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 17 | 78 | 3.00E-15 |
| PF03171.19 | 2OG-FeII_Oxy | 169 | 276 | 1.90E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04125 | E1.14.11.13 | Biosynthesis of secondary metabolites | map01110 |
| Diterpenoid biosynthesis | map00904 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.420 |
| SRR2545915 | Juvenile tuber | 8.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.140 |
| SRR5643514 | five period of Gastrodia elata | 1.200 | |
| SRR5643515 | five period of Gastrodia elata | 1.490 | |
| SRR5643524 | five period of Gastrodia elata | 0.470 | |
| SRR5643525 | five period of Gastrodia elata | 3.200 | |
| SRR5643528 | five period of Gastrodia elata | 1.150 | |
| SRR5643658 | five period of Gastrodia elata | 6.090 | |
| SRR5643659 | five period of Gastrodia elata | 1.110 | |
| SRR5643660 | five period of Gastrodia elata | 2.330 | |
| SRR5643661 | five period of Gastrodia elata | 1.750 | |
| SRR5643662 | five period of Gastrodia elata | 5.510 | |
| SRR5643663 | five period of Gastrodia elata | 2.560 | |
| SRR5643664 | five period of Gastrodia elata | 7.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.47 |
| Juven | Juvenile tuber | 4.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.86 | |
| Mother_Juven | Mother tuber of Juvenile | 1.67 |