Detail information of GWHGAAEX009197/evm.TU.scaffold_24.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18762.00E-47Actin-related protein Arp2/3 complex, subunit ARPC4
nrgi|743777640|ref|XP_010919256.1|1.76E-60PREDICTED: cytochrome c oxidase assembly protein cox16, mitochondrial-like isoform X3 [Elaeis guineensis]
trEMBLtr|A2XFE8|A2XFE8_ORYSI1.00E-59Putative uncharacterized protein {ECO:0000313|EMBL:EAY89558.1}
TAIRAT4G14150_32.00E-47Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000021803805805663-
Transcript Sequence

Network for GWHGAAEX009197

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14138.5COX16341205.00E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18182COX16 Thermogenesis map04714

Gene Ontology

GO term OntologyName
GO:0031966Cellular Componentmitochondrial membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.710
SRR2545915Juvenile tuber22.200
SRP108465SRR5643513five period of Gastrodia elata15.880
SRR5643514five period of Gastrodia elata13.060
SRR5643515five period of Gastrodia elata15.220
SRR5643524five period of Gastrodia elata14.610
SRR5643525five period of Gastrodia elata23.260
SRR5643528five period of Gastrodia elata25.700
SRR5643658five period of Gastrodia elata20.600
SRR5643659five period of Gastrodia elata12.060
SRR5643660five period of Gastrodia elata13.250
SRR5643661five period of Gastrodia elata11.250
SRR5643662five period of Gastrodia elata15.320
SRR5643663five period of Gastrodia elata16.570
SRR5643664five period of Gastrodia elata14.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.490
SRR6049655Rhizomagastrodiae_C368-T10_good_111.430
SRR6049656Rhizomagastrodiae_C368-T07_good_116.100
SRR6049657Rhizomagastrodiae_C368-T07_good_122.380
SRR6049658Rhizomagastrodiae_C368-T04_good_125.640
SRR6049659Rhizomagastrodiae_C368-T04_good_135.940
SRR6049660Rhizomagastrodiae_C368-T01_good_122.110
SRR6049661Rhizomagastrodiae_C368-T04_good_123.740
SRR6049662Rhizomagastrodiae_C368-T01_good_115.980
SRR6049663Rhizomagastrodiae_C368-T01_good_118.780
SRR6049664Rhizomagastrodiae_C368-T10_good_114.670
SRR6049665Rhizomagastrodiae_C368-T10_good_114.670
SRP279888GastroGastrodia elata tuber 14.88
JuvenJuvenile tuber6.10
Mother_GastroMother tuber of Gastrodia elata 20.62
Mother_JuvenMother tuber of Juvenile 11.36